| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2774 |
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| Symbol | |
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| ID | 5540260 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 3589185 |
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| End bp | 3594110 |
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| Gene Length | 4926 bp |
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| Protein Length | 1641 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640894900 |
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| Product | endonuclease/exonuclease/phosphatase |
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| Protein accession | YP_001432863 |
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| Protein GI | 156742734 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2374] Predicted extracellular nuclease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0508724 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTCTAT CCCGCCATCA CCCACCGATG ACGCTGCGCC TGCTGCTGGC GCTGACCACG
CTGGCGCTTC TGCTCACCAG CGCACTCGTT GCGCCGCAGC GCGCCGCCGC TACGACGACG
ATCATCACCC AGTGGACGTT CAACTCAAAC CCACCTGACG GCAATACCGC CACCGGCACG
ACCATCCCAG CCATCGGCAG CGGGACGGCG TCGCTTGTCG GCGGCACAAC CGCCACCTTC
GCTAGCGGGG ATGCCAGCGG TGGCAGCACC GACCCGAATA CCGGCGATGA CTCGGCGTGG
AACACGACCA CCTACGCCCC CCAGGGAACC GAAGACCGGC AGCGCGGCGC GCAGTTCGCA
GTCAGTACCG TGGGCTATGA GAACATCTCG TTCAGTTTCG ACCTGCGCCA CAGCAACACC
GCCGCCAATG CCGTCGCCCT CCTCTATTCG ACCGATGGCG GTATGACGTT CAGCGAAGCC
ACAACGTTCA CGGCGACGGC TGGCGATGCG TGGTTCAACA ATCGCGCGTT CGATTTCAGC
GGCATCCCGG CGCTCAACAA CAATCCCAAC GTCGTCTTTC GCGTGGTCGC CGCGTTTGCG
TCTGGAAGCA GCGTCTATGC CCCGTCTAAT CCAGGAAGCA CCTATGGAAC AAGCGGCACG
TTGCGCTTCG ATATGGTGAC GGTGCGCGGC AATCCGATCA GCAGCGCCAC ACCAACCCCT
TCGCCAACGC CGGAACCGAC GCCGACTCCC GTCGCGTGCA GCGCCCCCGA CACGCCGATC
AATCAGGTGC AGGGGAATGG CGCCACCACA CCCTTGAGCG GCACAGTCGT CACCATCCAG
GGCGTGGTCG TCGGCGACTA TGAGGGGCCT GCTCCCAACC TGCGCGGCTT CTACCTCCAG
GAGATCGCCC AGGTCGATGC CAACCCGCTC ACTTCTGAGG GCGTCTTTGT CTTCAACGGC
AACACCAACG CCGTCAGCCT CGGTCAGGTC GTCCAGGTCA CCGGCGCCGC CACCGAGTTC
CAGGACCAGA CCCAGATCGG CAATGTGACC GCCATCGAGT TCTGCGGCGG AACCGCCACA
GTCGCTCCGG TCGATGTCGT GATGCCCTTC CCCAGCGCCG ATTACCTCGA ACGCTACGAG
GGGATGCTGG TGCGCTTCCC GCAGACCCTC TATGTGACCG AGCACTTCCA GCTCGGGCGC
TTCGGACAGG TCGTCATGAG TTCGGACGCG CGCCTGCGTC AGCCGACTGA CGTCGTCGAT
CCCGGTCCGG CGGCGCTGGC ATTGCAGGCT GCCAATGACC TCAATCGCAT CATCGTCGAT
GACGAACTCA ACAACCAGAA CCCCGATCCG ATCCGCTTCG GACGCGGCGG CAACCCGCTT
AGCGCCGGCA ATACGCTGCG CGGCGGCGAT ACTGCGACCG GCATCGTCGG CGTGCTGACC
TACACCTGGG CTGGCAACCC CGCCAGCGGC AACGCCTATC GCCTGCGTCC AATCAACGCG
CTCGGCGGCG GCGCGCCCAA CTTCGTCGCT GCCAATCCGC GCCCCGACCT GCCGCCCGCT
GTCGGCGGCG ACCTGCGCGT GGCGGCGTTC AATGTGCTCA ACTACTTCAA CACGTTCAGT
GGGTGCACCT TTGGCGTCGG TGGACCCCCC GCCGACTGTC GCGGCGCGGA GAACGCGACC
GAGTTTACGC GCCAGAATGC CAAACTGATC CCGGCGTTGC TGCGCCTCGA CGCCGATGTG
CTCGGATTGA TCGAAATCGA GAATGACGGG TACGGGCCAA CGAGCGCGCT GGCGGAATTG
GTCAACCGCC TGAATGCCGC CACCGCGCCG GGAACGTATG CCTTCATCGA TGTCGATGCT
GCCACCGGGC AGACGAATGC GCTCGGCACA GATGCGATCA AGGTGGCGAT CCTCTACAAA
CCTGCCGTGG TCACTCCGGT GGGTCAGACC GCCGCACTCA ACACGGTGGC GTTCGTGAAC
GGCGGCGACA GCGCGCCGCG CAACCGACCG GCGCTGGCGC AGACCTTCCG CCACCGCGCC
ACTGGCGAGG ATGTGACGGT GGTAGTGAAC CACTTCAAGT CGAAGGGCAG TCCGTGCGAC
GCGCCCGACG CGGGGGATGG CGCGGGGAAC TGCAACATCG TGCGCCGCAA CGCGGCGCAA
GAACTGGTCG CGTGGCTGGC AGGGAACCCG ACCGGAACCG GGGACAACGA CATCCTGATT
CTGGGCGACT TGAATTCCTA CGCGCAGGAG GACCCGATAG ACGTGCTGCG CGCAGCGGGG
TACACCGACC TGGCGCAAAC GTTCATTGGC GACGAGGCGT ACTCCTACGT ATTCAACGGG
CAGTGGGGGT ATCTGGACTA TGCGTTGGCG TCGCCGTCGG CGCTGGCGAA GGTGAGTGGG
GTGGTGGAGT ACCACATCAA TGCCGACGAG CCGAGCGTGC TGGACTACAA CACGAACTTC
AAGAGCGCGG GGCAGCAGGT GAGCCTGTTT GCGACAGACC AGTACCGCAC CTCGGACCAC
GACCCGATCC TGGTTGGGTT GAACCTGAAC GATCCGATTG CGCTTTCGGC AGTGGCGACC
TTCGGCGCAG ATCGCGGGAT CACCGGCGCC GAGATTATCG ATATTCGTGG CGATCGTGCC
GTGTTGAGCA ACGCCGATGC GGGCACAGTG TACGTTCTCG ACACCACCGA TCTGCTCAAC
ATCCGGGTGC TGGCGACTGT TACCGGACTG ACCGGGTTGA ACGCTGTCGC CATTCATCCG
ACGCAGGATT ACTTCCTGGC AGTCGCCGGT TCGGCAGCGC CTGCGGCTGC GCCGCTCAAT
GGCGCCGTCT TCGCCTACCG ATTGGACGGC ACAATCATTG CCAGCGCGAC TACGGGCATC
CAGCCCGACT CGGTCGCCAT CTCGCCAAAC GGGCAGTACG CGGTGATTGC CAATGAAGCC
GAAGGATTTG CCGTCGGCGA CAATGGCGGG CCCGGTTCAC TGACGGTGGT GAACCTGAGC
GGTTTCGACC CGGACAGCTC AACGTCGCTG AGCGTGGCAC AGATCGCGCT GCCGTCGCTG
GCGAGCACAC CCGGTTTCAC GCTCAACCGC ACCGATGACA TTGCCCGGTT GCCGATTGAC
AACACACCGG CGACGCTGGA GCCGGAGTCG GTCACGTTCT CCGCCGATAG CCAGTACGCT
TACATTTCGC TCCAGGAGAA CAACGGCGTA GCGCGCCTCA ACCTTGTGGA CAATAGCCTG
ACGTTCTTTG GGCTTGGGCA GGCGACTCAC GTGTTTGATA CGGTCAACGG TGGAGGCTTC
AATCCGACCC GATTGTTAAG CCTGTTCCGC GAGCCGGATG GCATTGCGTT CATCGAGATC
GGCGGCAACG GCTACGTTGT CACGGCGGAC GAAGGCGACA CCCGCGACGA CGTTCCATCC
GGCGCAATCA GCGGGCGGGT GCGCGGCGGA CGCACAGTGA GCGTCTTCGA CGCGACAACC
GGCGCGCTGG TCGGCGATAG CGGCAATCAG ATCGACGCGC TGGCAGCGCG GTATGGCATC
TATCCCGATA GCCGCAGTGA TCGCGGCGGC GCTGAGCCGG AGGTGCTGGA CGCAAACGTC
TTCGGCGGGC GTGTCATTGT TGCTGTTGGT CTGGAGCGCG CCAATGCTAT CGCGCTGGTG
GACATCACCA ACCCGGCGGC GCCAAACGTC TTCCAGATCA TCCCTGCCGG CGCAGCGCCT
GAAGGGGTCA AACTGGTCGA ACGCAACGGC ACACTGTACG CGCTGGCAGC CAACGAAGCC
AGCAACACGC TGACGGTGGC GCGCGCGCCG CTCGGTGACG TGCTCTTCAC TCAGACATAC
ACCGAAGAGA CGCCGCTCGC GCTCCACGAT CCATTTGTGA TTGACCCGGA CTCAGCGCCG
GTCACGGTAA CGCTGAGCCT TTCTCCGGCG ACTGCGGGAA CGCTCAATAC CGCTGCGCTC
AACGGTACAC CTGCCGTTGT GAACGCGGCG CTGGCGAACC TTGTCTTCAC GCCGGCGCCG
AACAACGCCG GTCCGGTGAC GATCACCGTC AATGCTACCG ATGGACGGAC CGAAACCGGT
GGACTTATTC TATTGAGCGG CATTCCCACA CCGCCGGTTA CAACCGCCAG CGTCAGCGGA
CCGACCACGC CGCGCTGCCC GGCGGACTGC TTCTTCGGCA GCGCGACCGT CTCCCTGACG
ACCGATGAAC CGGCGACGAC GCAGTATCGG GTGAATGGCG GTTCGTGGCA GACGTACACA
GCACCTTTCG CAATTACAAC CGAAGGAACA AACCTGGTCG AGTTCTTCTC GACCGACGAG
TGGGGCGCAG CTGAGAGCGT AAAGTCGATC ACGGTGAAGG TTACAACCTT CCCGGCAACC
GGCATCCTCG ACGCCTTCAA TCGCGCGAAC GGGCGGCTTG GTCGCAGCTG GACCGGTGCG
ACGCAACTCG ACCAGTATCG TATCGCCGGG AACCAGGTCG ATGTCGAGAA AGGTGGCGCG
GTGCTGTGGA GGACACAGTT CGGCAACGAT CAGGAAGCGT TTTTCACGCT GACGAGCATC
GACCCGAACA GCCCGCATCA CACGCTGTTG CTGAAGGGGC GCGGCACGAA CGCAACGCAG
GGCGCCATTC TGGTTTCCTA CGATGCAGTG AATCGCCAGA TCGTGGTCGA GGCGCTTCAG
CCAGGGCAGG GATGGCGCAC GGTGCGCATC TTCCCGAACA TCACGCTCAA CGCGGGAGAT
GTGCTCGGCG CGCGCGCGCT GACGGACGGC TCGGTGCGGG TCTACGTCAA TTGTGAACTG
ATCGGCGTGG CCGACACAAC CACCGTAGTT GGCAACTTGT ATGTCAACCG CGGCGGTCGC
ATTGGTCTGT TCTACCACCA GGCAAGTAAC GCGACGCTCG ACGATTTCGG CGGCGGCAAT
CGGTAG
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| Protein sequence | MVLSRHHPPM TLRLLLALTT LALLLTSALV APQRAAATTT IITQWTFNSN PPDGNTATGT
TIPAIGSGTA SLVGGTTATF ASGDASGGST DPNTGDDSAW NTTTYAPQGT EDRQRGAQFA
VSTVGYENIS FSFDLRHSNT AANAVALLYS TDGGMTFSEA TTFTATAGDA WFNNRAFDFS
GIPALNNNPN VVFRVVAAFA SGSSVYAPSN PGSTYGTSGT LRFDMVTVRG NPISSATPTP
SPTPEPTPTP VACSAPDTPI NQVQGNGATT PLSGTVVTIQ GVVVGDYEGP APNLRGFYLQ
EIAQVDANPL TSEGVFVFNG NTNAVSLGQV VQVTGAATEF QDQTQIGNVT AIEFCGGTAT
VAPVDVVMPF PSADYLERYE GMLVRFPQTL YVTEHFQLGR FGQVVMSSDA RLRQPTDVVD
PGPAALALQA ANDLNRIIVD DELNNQNPDP IRFGRGGNPL SAGNTLRGGD TATGIVGVLT
YTWAGNPASG NAYRLRPINA LGGGAPNFVA ANPRPDLPPA VGGDLRVAAF NVLNYFNTFS
GCTFGVGGPP ADCRGAENAT EFTRQNAKLI PALLRLDADV LGLIEIENDG YGPTSALAEL
VNRLNAATAP GTYAFIDVDA ATGQTNALGT DAIKVAILYK PAVVTPVGQT AALNTVAFVN
GGDSAPRNRP ALAQTFRHRA TGEDVTVVVN HFKSKGSPCD APDAGDGAGN CNIVRRNAAQ
ELVAWLAGNP TGTGDNDILI LGDLNSYAQE DPIDVLRAAG YTDLAQTFIG DEAYSYVFNG
QWGYLDYALA SPSALAKVSG VVEYHINADE PSVLDYNTNF KSAGQQVSLF ATDQYRTSDH
DPILVGLNLN DPIALSAVAT FGADRGITGA EIIDIRGDRA VLSNADAGTV YVLDTTDLLN
IRVLATVTGL TGLNAVAIHP TQDYFLAVAG SAAPAAAPLN GAVFAYRLDG TIIASATTGI
QPDSVAISPN GQYAVIANEA EGFAVGDNGG PGSLTVVNLS GFDPDSSTSL SVAQIALPSL
ASTPGFTLNR TDDIARLPID NTPATLEPES VTFSADSQYA YISLQENNGV ARLNLVDNSL
TFFGLGQATH VFDTVNGGGF NPTRLLSLFR EPDGIAFIEI GGNGYVVTAD EGDTRDDVPS
GAISGRVRGG RTVSVFDATT GALVGDSGNQ IDALAARYGI YPDSRSDRGG AEPEVLDANV
FGGRVIVAVG LERANAIALV DITNPAAPNV FQIIPAGAAP EGVKLVERNG TLYALAANEA
SNTLTVARAP LGDVLFTQTY TEETPLALHD PFVIDPDSAP VTVTLSLSPA TAGTLNTAAL
NGTPAVVNAA LANLVFTPAP NNAGPVTITV NATDGRTETG GLILLSGIPT PPVTTASVSG
PTTPRCPADC FFGSATVSLT TDEPATTQYR VNGGSWQTYT APFAITTEGT NLVEFFSTDE
WGAAESVKSI TVKVTTFPAT GILDAFNRAN GRLGRSWTGA TQLDQYRIAG NQVDVEKGGA
VLWRTQFGND QEAFFTLTSI DPNSPHHTLL LKGRGTNATQ GAILVSYDAV NRQIVVEALQ
PGQGWRTVRI FPNITLNAGD VLGARALTDG SVRVYVNCEL IGVADTTTVV GNLYVNRGGR
IGLFYHQASN ATLDDFGGGN R
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