| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2757 |
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| Symbol | |
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| ID | 5540243 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 3569406 |
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| End bp | 3570176 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640894883 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001432846 |
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| Protein GI | 156742717 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00394845 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTCTGA CCGGAAAAAC TGCAATCGTC ACCGGCGCGG CAAGCGGAAT CGGGCAAGCC
GTCGCGTTGC GCTTTCTTGC CGAGGGAGCG CACGTCGCCG GGTTCGACAT TGATGATGCC
GGACTGAACG AGACGCGCGC ACTGAGCGGC GCGTCGGAGG TGTTCTTTCC CATCGCCTGC
GACCTGACCG ACCCATCGCA GGTTGAGCGG GCAGCGGCAG AGGCGATTGC GCAGTTGCGC
CGCCTTGATG TTGTGTTCAA CGGCGCGGGC GCAAGCGGTC GGCGCTGGGG TGATGGACCG
GTGGACGCCT GCACCGTCGA TGGATGGCGG CGCACGCTCG ATGTGAACCT GACGAGCATC
TTTCTCGTGT GCCACACGAC GGTGCCACAC CTGCTGGCGG CAGGCGGCGG ATCGATCATC
AATCTCAGTT CGGTTCTGGG CATAGTTGGC GGCGACGCCG ATTTCGCCAC TCATGCCTAT
GCCGCCGCGA AAGCCGGGAT CATCGGCTTG TCGCGCGCAA TGGCAGTGTA CTATGCACCG
CACCGAGTGC GCGTCAATGT CATTGCTCCC GGTCTGATCG CCACACCCAT GAGCCGCCGC
GTTCAGGAAA ATGAACGAAT CCAGCAGCGG CTGGCGCACC TTCAACCGCT GACCGGCGCC
ATGGGAGCGC CCAAGGATGT CGCTGCCGCG GCCGCATACC TGGCATCCGA TGACGCTGCC
TTCGTTACCG GCGTCGTGTT GCCCGTCGAT GGCGGATGGA CTGCGTGGTA A
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| Protein sequence | MRLTGKTAIV TGAASGIGQA VALRFLAEGA HVAGFDIDDA GLNETRALSG ASEVFFPIAC
DLTDPSQVER AAAEAIAQLR RLDVVFNGAG ASGRRWGDGP VDACTVDGWR RTLDVNLTSI
FLVCHTTVPH LLAAGGGSII NLSSVLGIVG GDADFATHAY AAAKAGIIGL SRAMAVYYAP
HRVRVNVIAP GLIATPMSRR VQENERIQQR LAHLQPLTGA MGAPKDVAAA AAYLASDDAA
FVTGVVLPVD GGWTAW
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