| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2750 |
|---|
| Symbol | |
|---|
| ID | 5540236 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 3560027 |
|---|
| End bp | 3561169 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640894876 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001432839 |
|---|
| Protein GI | 156742710 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCAGC ACATCGAACA AGAACGTCTT CGCTTCGAGC AACAGCGTCG CCTCATTTAT
CGGATTGCGG GAGTTCTTGG TGTGCTGGCA ATCCTCTATG CCCAGTGTAT CAACTTCATT
GACCCATCCT CATCTTACGC TTACCGCGCT ATCTACGCGC TCAATCACAT TGCGTTCGCC
GGCGTGTGCA TTGCGGTGGT CTGGATGCTG AGGCGTCAGC ATATCCCGAT TGATCGTATC
GAGCGGTTGA TGCTGGTTAT ATTCATCGTT CAATCACTTG GATTCAACGG CATTGTGCCG
GCAATTTTTC TCCCGTCGCC CTCGGCAATG CTGATCGATG CGATTGGAGA CGACATCTGG
TTTCTGCTGA TTATTTGCGT GTTGGCGGTT CATCTCTATG ATGTGCGACG CGGCGCGTTG
ATCGCAGCCA GCGTCTTTCT CGTATCATTT GGCATCGTGA TGATCCAGCT CGCGCGCTGG
AGGCTGATCG GCGTTGACGC AGCGAACAGT CAACAGGTAA TCAGCATCTA CCTGATGGCC
GGCGCGCTGT TGGGATTTTT GATCGTGCTG TCGGCGTACC GCGCGCAGGC GGAACGGTTG
CGGACAGGGT ATGAGCTGAT GATCCATATG GCGTACACCG ACACTCTCAC CGGTTTGCCC
AACCGCCGCC GCCTGTATGA AGAGTTGTGC CGGTTGATTG GGATGGCGGA TCGGTATGGT
CAGGAATTTT GCGTCTGCCT GTTCGATATC GATCACTTCA AGCAATTGAA CGATCAACAC
GGGCATCTGG TTGGTGATCA GGTGTTGTGC GCCATAGCGC AAACCGCACT GCCGCACCTG
CGCGCCGTGG ACCATTTTGG GCGCTGGGGT GGTGAGGAGT TTGCCATCCT CCTGCCGCAG
ACCAGTCTGA GCGATGCGCA GATGGCGCTT GATCGGGTGC GCATGGCATT GCAAGCGATC
AATCTGGCCG ATGTTCCGAC GATTACCGCC AGTTTTGGCG TAGCCGAATA TCTGCCTGGC
GATACCAGCG AGTCCATCCT GCATCGCGCC GATCAGTCGA TGTACCTGGC GAAAACGACC
GGACGCAACC GGATTGTGGT TGATGGCGAC GTCGAGGCGG GCCTGCGGTA CGCCCACAGG
TAA
|
|---|
| Protein sequence | MMQHIEQERL RFEQQRRLIY RIAGVLGVLA ILYAQCINFI DPSSSYAYRA IYALNHIAFA
GVCIAVVWML RRQHIPIDRI ERLMLVIFIV QSLGFNGIVP AIFLPSPSAM LIDAIGDDIW
FLLIICVLAV HLYDVRRGAL IAASVFLVSF GIVMIQLARW RLIGVDAANS QQVISIYLMA
GALLGFLIVL SAYRAQAERL RTGYELMIHM AYTDTLTGLP NRRRLYEELC RLIGMADRYG
QEFCVCLFDI DHFKQLNDQH GHLVGDQVLC AIAQTALPHL RAVDHFGRWG GEEFAILLPQ
TSLSDAQMAL DRVRMALQAI NLADVPTITA SFGVAEYLPG DTSESILHRA DQSMYLAKTT
GRNRIVVDGD VEAGLRYAHR
|
|---|
| |