| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2740 |
|---|
| Symbol | |
|---|
| ID | 5540226 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 3543070 |
|---|
| End bp | 3544146 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640894866 |
|---|
| Product | NADH-ubiquinone oxidoreductase chain 49kDa |
|---|
| Protein accession | YP_001432829 |
|---|
| Protein GI | 156742700 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG3261] Ni,Fe-hydrogenase III large subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCATATT CGTTGACGTT GGGACCTTTC CACCCGGCGT GGCTCGGTCC ACAGCGATTC
GTTCTGCGCA TCGCCGGCGA TCGCGTTGTC GATGTCGAAT ATCAGAGCGG GTTCAATGAG
CGAAAATGCG CTGAGCGTCT CTCGCGGTTG CCTTTGCCCG ATGTGCTGCA TCTGGTTGCG
CGGATTTGCG GTGAGTGTTC CTTTGCTCAC TCGCTGGCAT TCTGTCAGGC GTTGGAGCGT
CTGTACCCAT ACGACATCGG CGCGCGCGCC GCGCTGATCC GGGTGGTTGC CGCCGAGTTG
GAACGAGCCG CCTCTCATCT GCGTGCCGCT GGCGCTGTGC TTGCTGCGAT TGGCATGGAT
CAGCGCGGCG CGCACCTCGA GACCCTCTCC CGGCAATTTC GTGAGATGCT GGCGCAGGTG
ACCGGAGGGC GCGTTCCCCC GCCGGTCTGT GCACCGGGTG GATTGCTACG CGATCTGTCA
TCGAGCGACC GAGACGACCT GCTGGCAATG CTGCCGGGAA TCAGCACCGA TCTCTATCGC
TTCATTGATC GCCTGATCGA TCAGCGGCTG TTGTTGGCAC GCACGATTGA GGTCGGTATG
CTGCCACGCA CCGCAGCGGA ACAGTTTGGC GTGCGCGGTC CAATGGCGCG CGCATCCGGC
ATCCGGCGTG ATGTCCGTGC CGATCAACCG TATGCGGCAT ATGCGATGCT TGCCTTTAAG
CCGATTGTGC AGGAAGGCGG CGATGTGTAC GCCCGGTTGC TGGTGTTCCT GTTGGAAGCC
TACGAAAGTA CGAAACTGGT CGAGACCGCG CTGCAACATC TTCCTGCGGA AGACCCAGTT
GTGGCATTGC CGCACGAAAT ATCGCGTGGT CAGTCATCTG CGGCGGTTGA GGGTCCCAGA
GGAGCGATTC GCTATCTGAT CGAAAGCGAT GGACTGCGGT TGACCCGTGT TCAGATCGAT
ACGCCGCGCC AGTGTGATCG GTTGCTGGCG CGCACGGTGT TAAGCCGGGC GCAGCTGGAC
GATGTGATGG CGATTGTGGC GTCACTCGCC ATCTGTGTTG CCTGCGCCGA ACAATAA
|
|---|
| Protein sequence | MPYSLTLGPF HPAWLGPQRF VLRIAGDRVV DVEYQSGFNE RKCAERLSRL PLPDVLHLVA
RICGECSFAH SLAFCQALER LYPYDIGARA ALIRVVAAEL ERAASHLRAA GAVLAAIGMD
QRGAHLETLS RQFREMLAQV TGGRVPPPVC APGGLLRDLS SSDRDDLLAM LPGISTDLYR
FIDRLIDQRL LLARTIEVGM LPRTAAEQFG VRGPMARASG IRRDVRADQP YAAYAMLAFK
PIVQEGGDVY ARLLVFLLEA YESTKLVETA LQHLPAEDPV VALPHEISRG QSSAAVEGPR
GAIRYLIESD GLRLTRVQID TPRQCDRLLA RTVLSRAQLD DVMAIVASLA ICVACAEQ
|
|---|
| |