| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2727 |
|---|
| Symbol | |
|---|
| ID | 5540213 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 3525212 |
|---|
| End bp | 3527401 |
|---|
| Gene Length | 2190 bp |
|---|
| Protein Length | 729 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640894853 |
|---|
| Product | glycosyl transferase family protein |
|---|
| Protein accession | YP_001432816 |
|---|
| Protein GI | 156742687 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1807] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGCGCG GATCGTGGAT GCGCCATAAA CGCAGGATTT CCTGTTCAAT GAACGCTTCG
TCGAAGGAAC GCCTGGTCCT GCTACTCATT CTCGCATATG CGCTGGTTCT GCGCCTCCTG
CTCTGGAGCC AACCGCTCCA TGAACCAGCC AATGATGAGG TCGAGTACAT TACCGTAGCG
CGCGATCTGC TGGACGGGCG CGGCTGGTCG TTCTACGACC GATACCACTG GCTACGCGCG
CCACTCTATC CGCTCTTTCT GGCAGCGTCC TGGGGGCTGG CAGGCGATGA CGGCTGGCCC
CGCGCCACGC GCGCCCTGCA TTTGGCGGCG CTGCCCAATA TCCTCTTGAG CGTTCTGAGC
GTCTCCCTGG CATATGCGCT GACTGCCCGG TTGGTGAACC GACGGGCGGC GCTCCTGGCG
GCGCTGATCA CTGCGACGCT CTGGACACAC GCTACATTTG CCAGCCTGTA CATGTCGGAA
ACGCTCTTTA CCGTGCTGTT CCAGATCGGA CTACTCGGTC TGGTTCAGGC TGGTGACCGG
CAACCAACGG CGAAACGCTG GTTGTTGATC ATTGCGGCAG GCGTGGCGCT AGGGCTTGCG
GCGCTCACCC GATCGCTGGC GCTGCTGTTT CTGCCAATTG CCGCAGGCTG GTTGGCAGTT
CACCTGCACC GGCAGCGGTC AGGTCTTCCC CATCGACCGG CGACGCCGTT GCTGGCGGCT
GTCGTCCTTC TGGCGAGCGC AGGGGCGGTT ATCGCACCCT GGACAATCCG CAACTACCAG
GCGTATGGCG GTTTTATTCT CATCGAAACG GGTCTCTCGT ACAACCTATG GGTATTCAAC
GAACCACACG AGGATCGTGA GACTATCCAT CGGATCCTTG AAAACATCAG CAACCCGGTG
GAGCGGGCGA ACGATGCCAC TGAACGCGGG CTGGAGCGTC TGCGCGAAGA CCCCATGATT
ATCGCGCGCA AACTCTGGCC CAACTGGGTC TTTCTGGCGC GCATCAAGCC CATCCAGGAT
CGCTTTCTCA TGGAAAGTTA CTACGCGGAT GTCGATCTGC CACTGTTCGT TGCAGCGTTG
ATCTTCGATG ATCTGCTGTA CGTCCTGATC GCCTTTGGAG CAATCGTCGG TCTGACGCAC
GCGGTGCGCC TGCGGCGACA GGCATTGCAC ACGCATCAAT GCTGTCGTCT GCCGGTGGCT
CCTGCCATCC TCTGCCTGCT CTGGATTGGC TACGCAATCG CCACGATGCT GCTGACGCAT
GGTGAAGCGC GCTACCGGCA TTTTTTGTTT CCGGCGCTCA TTCCATATGC AGCATGGACG
TTCACGGCAC TGAAGCGCGG CGCCGCCTGT TTCGCGCGTG GGCGGGTGAT TGCAATCGCA
CCGTTGATGG GGGTATTTCT CTGGACGGTG TTGACCGCTT ACCCATGGGG GTGGGCAGTC
GAAAACCTGA CGCGCGGCAG CCGCGCGCTG GCAGGGGATG TCTGGATGGC GCTTGGCGCG
CCGGATCGAG CGGCAGACGC CTACCTGAGC GCGCTGGCAG CGAAAGCCAC CCCCGACGGT
TGGTTGCGTT TGGGTGCGGC GCACCTGGCG CGCGGCGACA TCGAGCGGGC GCGGGTGGCT
TACCGCGCGG CGTGGGATGC GAGCCGCGCC TACTATATTG CCAGCGCGCA CCTTGGCGAT
CTGGAGCGTT CGCTTGGCAA CCTGGACGAG GCGCGGCGCG CCTTTGCCGG AGCATATGCC
GACGAGCAGC GGGTGCTCGA CTGGTCGTGG CGCATGCTTG GGCGGAATCC GCCAACATCG
CTGGACGTTG GCGACGGTCT CGATTTCGGG TACGTTGGAG GCGTGTACCC TGCCGAAGAA
CTTTTGAGCA GACAGGCGCG CTGGAGCGCC GGGCGGGCAT TGCTGCGACT GGGAGGACTC
GACGCGCGCG CCCCGGTAGT GTTGACGCTC CGGCTGGCGG CGCCCCATCC GAACCGACCA
AGTATTCCTG TGCGCATCTG TATCACAGGG ACGTGCCGAC AAATTGAAGC GCATGCCGGG
TGGCGCACGT ACACCCTGAT GGTCGAGCGA CGCAACACAC CGGCGCTTGT CGAAGTGCAT
AGCCCGACAT TCATGGCTGC CGACGGACGG CGACTGGGGG TGATCATCGA TTGGGCGGCG
ATGATTCCAC TTACCGGGAG AGAGCGCTGA
|
|---|
| Protein sequence | MRRGSWMRHK RRISCSMNAS SKERLVLLLI LAYALVLRLL LWSQPLHEPA NDEVEYITVA
RDLLDGRGWS FYDRYHWLRA PLYPLFLAAS WGLAGDDGWP RATRALHLAA LPNILLSVLS
VSLAYALTAR LVNRRAALLA ALITATLWTH ATFASLYMSE TLFTVLFQIG LLGLVQAGDR
QPTAKRWLLI IAAGVALGLA ALTRSLALLF LPIAAGWLAV HLHRQRSGLP HRPATPLLAA
VVLLASAGAV IAPWTIRNYQ AYGGFILIET GLSYNLWVFN EPHEDRETIH RILENISNPV
ERANDATERG LERLREDPMI IARKLWPNWV FLARIKPIQD RFLMESYYAD VDLPLFVAAL
IFDDLLYVLI AFGAIVGLTH AVRLRRQALH THQCCRLPVA PAILCLLWIG YAIATMLLTH
GEARYRHFLF PALIPYAAWT FTALKRGAAC FARGRVIAIA PLMGVFLWTV LTAYPWGWAV
ENLTRGSRAL AGDVWMALGA PDRAADAYLS ALAAKATPDG WLRLGAAHLA RGDIERARVA
YRAAWDASRA YYIASAHLGD LERSLGNLDE ARRAFAGAYA DEQRVLDWSW RMLGRNPPTS
LDVGDGLDFG YVGGVYPAEE LLSRQARWSA GRALLRLGGL DARAPVVLTL RLAAPHPNRP
SIPVRICITG TCRQIEAHAG WRTYTLMVER RNTPALVEVH SPTFMAADGR RLGVIIDWAA
MIPLTGRER
|
|---|
| |