Gene Rcas_2724 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2724 
Symbol 
ID5540210 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp3518263 
End bp3520746 
Gene Length2484 bp 
Protein Length827 aa 
Translation table11 
GC content58% 
IMG OID640894850 
Productmulti-sensor hybrid histidine kinase 
Protein accessionYP_001432813 
Protein GI156742684 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGTGT CGGAACAGTC TCAGGATCGG CTGCATGAAC CATCATCACT GACCACACTG 
ATCACCCTGC TGTTGGGGTT TGCCCTGATC CTCGCCATTG TCAGCACGGG AATCTGCTTC
ATCAGCGGCA ACCTGACCGG TGCTGCAATT GCGGTCATTG CCGCCATCGC CGGATTACTC
CTCGCGCTGG TGCGCCGCCT GGCGCTACGC CGCCACAGCC ACGCCGCAGT GATGCTGTTC
GCCATCACTC TCTTGCTGGG CGCAATAGCC AGTGTCTGGG TGGAACCGGC CAGTGCGCCG
GTTGCTGTCC TTATTCCGCC GCTCATTCTG ATCACAACGG TGCAATATCT CGAACGCCGC
AATGTTGGAC CCGTGATCTT TCTCATCAGT CTTGCCACTG TGGTCCTTGC CATTGGCAGC
GAGGCGGCGC AACCGTGGTT TGCCACGCGC GAGCCGCTTG CGCCTGTCCT TCGCATCACC
GCACTGGTTG GCGCCATACT TCTCCTGGCA GCGATCCTCT GGCGCTTCAG TTCGCGCCTT
CACGCCACAC TGGTGCGTCT CGAAGCCGCT AATGCCGCTT TGCGCGAGAG TGAGGCGCGG
TATCGTTCCG TTGTCGAAGA CCAGACCGAC CTGATCTGCC GCGCACAATC TGATGGCATG
ATTACCCTGG TCAATGACGC CAGTTGTCGC TACTGGGGAT TGACACGCGA TGAAATCATC
GGCAGCGATT TGCGGCGGTT CGTCCACCCC GATGATATTC CGCGCGTCAA TCATCACTTC
GAATCGCTCA CCTCTGAGTC GCCGGTGGGA ACTATTGAAC TTCGAGTCAT TCCACCGGGC
AGCGAGGTGC GCTGGCAGCG ATGGACCGTC CGCGCACTCT ACAATGGCGC ACGCCGCGTC
GGGTACCAGT TGGTCGGGCG CGACATCACC GAGCGCAAAC GCATGGAAGA ACATTTGTTT
CGCAGTGAGC GTCAGTTCAA AACCATTGCC GAAAACGCGC CCGACATTAT TTCGCGGTAC
GATCTCCAGG GACGCTACCT GTACGTCAAT CCGGCGTTTG AACAGGCAAC CGGGATAACC
GGTGCGGAAA TCATGGGCAA AACGCAGCGC GAACGCGGCG TGCCCGAACA TATTGCCCAA
CTGTGGGACT CCCGTTTCCA GGCAGCCATC GAGACCCGAT CCGTTCAGAC GATCGAGTTT
GATCTTCAAA TGCCATCGGG TCATCGTTTT TATGAGACGC GCATCGTGCC TGAACTTGGT
CCTAATGGCA CTGTTGAGTC TTTGCTGGCG CTTTCGCGCG ATGTGACGGA GCGGCGCAAA
AACGAACTTG TTCTGCAACA CCGTCAGAAA CTCGAAAGCA TGGGGGTTAT GGCGCAGGGC
ATCGCCCATC AGTTCAACAA TCTGCTTGGT ATTATGCTGA ACAATGCCGA ACTGGCTCTC
ACGACGCTTT CACCGCAGGC GCCGGAGCGG CTCTTGATCG AATCTATCGT CTGCGCCGGT
CGACGCGCGG CGGTTATCAC GCGCCAGATG CTGACCTACG TAGGGCATAG CCCATTGCAG
ACCACTCTCG TACACTTGAA CGACCTGATC GAAGAAATGG CAGCACTCTT GCAGGCATCG
ATTCCAACCG GCGTCACGCT GGTCTATCGC CTGAGCGACC ACGATCTGTT GGTGGAAGGG
GATGCCGCCC AACTCCGACA GGTCCTGCTC AATCTGACCA TCAATGCGGC AGAAGCCATC
GAAGGCAGAC CCGGCGAAGT TGTGATTTCA ACCGATGCCC GCTTTGTTGA GCGCTCGTTC
CTGGTGACAA CGATTGGAAC CCCTGATCTG ACCGACGGAA CGTATGCGGC GCTGTCTGTC
AGCGACAATG GATGCGGCAT GGACGCTGCA ACCCTTGAAC GAATCTTTGA CCCTTTCTTC
AGCACCAAAT TTATCGGTCG CGGTTTGGGG TTGCCTGCAA CGTTGGGCAT TGTGCGCGGA
CATCACGGCG CCATCCACGT CGCCAGTGCG CCCGGTGAGG GAACGACCGT CACCGTCTTT
CTGCCGATAG CGCATCAACC ATCCATCCGC ACCGGTTTGT CGCCTCAGAC CCGCACGGCG
GCAAGTTCGG GCTATTCAAA AATCTTTCTG GTCGTCGATG ATGAAGAGAG TGTGCGCGCC
GTTACGGCGC GCATGCTGGA GTGGATGGGA CATCCAGCGC TCACAACCGG CGATGTCGAG
ACGGCGATCA TTCTCGCGCG ACAACATTGC GAACACCTGG CGTGCATCCT GCTCGACCTG
ACGATGCCTG ATCGTGATCT CTATCAGACG GTCAGAGATT TCCGGCAGAC ATGCCCCGAT
GCGCCGATCA TTCTGATGAG CGGGTATACC GAAGATATTG CCAGCCGACG TTTCTCGCAC
CTTGCGTTGA ATGGCTTTCT GCAAAAACCG TTCACTTCAT ACGAACTCCA AGGCGCCATC
GACTGTGCGC TGGCTGCAAT CTGA
 
Protein sequence
MSVSEQSQDR LHEPSSLTTL ITLLLGFALI LAIVSTGICF ISGNLTGAAI AVIAAIAGLL 
LALVRRLALR RHSHAAVMLF AITLLLGAIA SVWVEPASAP VAVLIPPLIL ITTVQYLERR
NVGPVIFLIS LATVVLAIGS EAAQPWFATR EPLAPVLRIT ALVGAILLLA AILWRFSSRL
HATLVRLEAA NAALRESEAR YRSVVEDQTD LICRAQSDGM ITLVNDASCR YWGLTRDEII
GSDLRRFVHP DDIPRVNHHF ESLTSESPVG TIELRVIPPG SEVRWQRWTV RALYNGARRV
GYQLVGRDIT ERKRMEEHLF RSERQFKTIA ENAPDIISRY DLQGRYLYVN PAFEQATGIT
GAEIMGKTQR ERGVPEHIAQ LWDSRFQAAI ETRSVQTIEF DLQMPSGHRF YETRIVPELG
PNGTVESLLA LSRDVTERRK NELVLQHRQK LESMGVMAQG IAHQFNNLLG IMLNNAELAL
TTLSPQAPER LLIESIVCAG RRAAVITRQM LTYVGHSPLQ TTLVHLNDLI EEMAALLQAS
IPTGVTLVYR LSDHDLLVEG DAAQLRQVLL NLTINAAEAI EGRPGEVVIS TDARFVERSF
LVTTIGTPDL TDGTYAALSV SDNGCGMDAA TLERIFDPFF STKFIGRGLG LPATLGIVRG
HHGAIHVASA PGEGTTVTVF LPIAHQPSIR TGLSPQTRTA ASSGYSKIFL VVDDEESVRA
VTARMLEWMG HPALTTGDVE TAIILARQHC EHLACILLDL TMPDRDLYQT VRDFRQTCPD
APIILMSGYT EDIASRRFSH LALNGFLQKP FTSYELQGAI DCALAAI