| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2711 |
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| Symbol | |
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| ID | 5540197 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 3499515 |
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| End bp | 3500756 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640894837 |
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| Product | lycopene cyclase family protein |
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| Protein accession | YP_001432800 |
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| Protein GI | 156742671 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0644] Dehydrogenases (flavoproteins) |
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| TIGRFAM ID | [TIGR01790] lycopene cyclase family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACCGTGG AAGATGTGCT GGTTGTGGGC GCCGGTCCGA CCGGGCTGGC AATTGCATCG
GCGTTGAGCG ACGCCGGTCT GCGCGTCGTG GGGCTATCGG CGACGGCGCC AACGAAGCCG
TGGCAGAATA CCTATGGCGT ATGGCTCGAT GAACTGCCGT CGCCGGAATT GCTCGCCACC
GTGGGCTGTT GCTGGTCGGA TGTCGTGGTG TATGCTGCGC GCCGGACGAT TCCACTCCGG
CGGGAGTATG GACTGTTCGA CAACCGTCGG TTACAGCAGC ATTTGCTCGA ACGCGGCGAG
CGCGGCGGGG TCGTCTGGCA TACCGGCGTC GCTGCTGCCG TCGAGCATCG GGTGTCGCAC
TCGCGGGTGA GCACCCGCGA TGGTCGGGTG TTCGCGGCAC GGTTGGTGGT GGACGCCAGC
GGGCACTCGC CGGCGCTGCT CCGCCGTCCA GTTGCACTGC GGGTGGCGCG CCAGGCGGCG
TATGGCATCG TCGGTGAGTT TTCGGCGCCG CCGGTGCAAC CTGGTCATAT GGTGCTGATG
GATTACCGCG CCGATCACCT GGCGCCGGAA GAACAGCACG AGCCGCCGAC TTTTCTGTAC
GCGATGGATC TGGGTGGCGG GCAGTTCTTT GTGGAAGAAA CGTCGCTGGC GCATGTTCCC
GGCGTGCCCC TCTCGACCCT TGAACGGCGG CTGCGCCGTC GATTGGATTC CTGTGGTGTA
GCGGTGCGCC GGGTGGCGCA TATCGAGCGC TGTCTTTTCC CGATGAACAA TCCATTGCCA
TACCTCGATC AGCCGCTGAT GGGATTTGGC GGCGCGGCAA GCATGGTGCA TCCGCCATCG
GGCTACATGG TCGGTAAGGC GTTGCGTCGC GCTCCTGAAG TGGCGCAGGC GATTGCGCAG
GCGCTTGGCG CAGCCGGCGC AACACCGCTC AGCGCGGCGC GCGCCGGGTG GCAAACGCTC
TGGTCTCCGG CGCGGTTGCG GCGGCGACAG TTGTACCTGT TCGGTCTGGC AAGCCTGATG
CGCTGTAATA GCGCAACGAT CCAGGCATTC TTCGAGTCGT TCTTCAGCCT GCCGCGCCAC
GAATGGACGG GGTATCTGTC GGATACGCTG AGCACTGCGG AACTGGCGCG CACCATGCTG
CGACTGTTCG TGCGCGTGCC GGGCAGCGTG CGGCGCACCC TGATCGCGGC GGCTGGCGCA
GAACACGCCC TGCTGCGTCG TGCTGCGTTT GGGCAGGCAT AA
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| Protein sequence | MTVEDVLVVG AGPTGLAIAS ALSDAGLRVV GLSATAPTKP WQNTYGVWLD ELPSPELLAT
VGCCWSDVVV YAARRTIPLR REYGLFDNRR LQQHLLERGE RGGVVWHTGV AAAVEHRVSH
SRVSTRDGRV FAARLVVDAS GHSPALLRRP VALRVARQAA YGIVGEFSAP PVQPGHMVLM
DYRADHLAPE EQHEPPTFLY AMDLGGGQFF VEETSLAHVP GVPLSTLERR LRRRLDSCGV
AVRRVAHIER CLFPMNNPLP YLDQPLMGFG GAASMVHPPS GYMVGKALRR APEVAQAIAQ
ALGAAGATPL SAARAGWQTL WSPARLRRRQ LYLFGLASLM RCNSATIQAF FESFFSLPRH
EWTGYLSDTL STAELARTML RLFVRVPGSV RRTLIAAAGA EHALLRRAAF GQA
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