Gene Rcas_2697 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2697 
Symbol 
ID5540179 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp3482768 
End bp3483403 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content65% 
IMG OID640894819 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001432786 
Protein GI156742657 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTATAA CAAACAATGA CGCGGGAGCG ATGATAGCGA CAGCGAGCGA CCGGAAGATG 
GCGGAACACG AAAGCGATGG CGCGCTGCTC GAACGACTTC GACACGGCGA CGAGGCGGCG
TTCGAGGAAC TCTTCGCGCG CCACTATGCC ACGGTGTACC GCGTGCTCTA TGGGCTGACC
GGGAAGCGCG AGATGGCGGA GGATGCGGCG CAGGAGACGT TTCTCATCCT CTACCGGCGA
CCGCCGGCGC CCCATCAACC GTTACGCCCG TGGCTCTGTC GCGTGGCGCT CAACACCGCA
CGCAACGCGC TGCGCGGTGA ACGGCGGGAT GCCATGCGCA TCGCACGATT GGCTCAGGCG
CCCGCTGCCG AAGACCCTTC TGAGGCGGCG GAGCGCGCCG AGGAGCGCGA TCAGGTGCGC
GCTGCCCTGG CGACCATGCC GCAGCGCCAG GCGCACCTGT TGCTGCTGCG CCATGCCGGA
TTGTCGTATG CTGAAGTCGC CGCCGTGCTC AACCTCGCAC CGGGTTCGGT CGGCACACTC
CTCGCCCGCG CCGAACGCGC GTTTGTTGCG GCATTTACAA AGGAACAAAC CGCCGCCACG
GAAGAGCATT CGTCTGGAAA GCAGGTGCAG CCATGA
 
Protein sequence
MIITNNDAGA MIATASDRKM AEHESDGALL ERLRHGDEAA FEELFARHYA TVYRVLYGLT 
GKREMAEDAA QETFLILYRR PPAPHQPLRP WLCRVALNTA RNALRGERRD AMRIARLAQA
PAAEDPSEAA ERAEERDQVR AALATMPQRQ AHLLLLRHAG LSYAEVAAVL NLAPGSVGTL
LARAERAFVA AFTKEQTAAT EEHSSGKQVQ P