| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2670 |
|---|
| Symbol | |
|---|
| ID | 5540152 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 3441820 |
|---|
| End bp | 3443862 |
|---|
| Gene Length | 2043 bp |
|---|
| Protein Length | 680 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640894792 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001432759 |
|---|
| Protein GI | 156742630 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1306] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.750364 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGATGGA TTCGCGGATG CGCCCTGGCT GCTGTGAGTA TTCTGGCGCT TATCGTCGCG
GCGTGCAGCC AACCCGCCGT TCCGCTCACC GGAACGATCG CCGACGCTTA TACAGGAAAA
CCGGTCGTTG CGACGTTGAC CATTGGCGAT CTCCAGGTCA CCACCGACGC GAACGGGGTC
TATCAGATCG ATCGCTGGAG TGCGCGTGAT GTCATCAAGG TCGTTGCCAG TGGGTATGAG
CCGATCGAAA TCAATCTTTC TACGCTGCCG AACCTGGAAC GCCCATCGCC TCCGGCGGTC
ACGCTCGAGC CGGTGCAGGT GCGTCCCAAT ACCCTCAGCG GTGTGATTAC CGATCTGTAT
ACGGGCATGC CGGTGGCAGG CGCGCTGGTG CAGGCGTCTG AAACGATCAG CGCCACCACC
GACGCTGAAG GGCGGTATGT GCTGACAGGC GTGCCGGAAA CGTTTCGCGT GACCATTACT
GCCGATGGAT ACGCGCCGGT GGTCAGTGAT GTGGCGCGCA CCACATTGTT CGATGCCGCG
ATCCGTCCCG ATACACTACG TGGCGCCGTG ACCGATGGGT ACACCGGACG ACCGATTGCC
GGCGCATCGG TCGCGCTTGG CGATCTCCGG GCGACAACCG ACAGCAATGG GCAATATGTC
TTGCGCGGCG TGCCTGAGAA GGGAACCATG ACGATCAGCG CCAGGGGGTA TGCCCGTCTC
GATCAACCGG TCGAACGGGT GACAACGCTC GATGTGGCGC TTCGTCCTGA TACGCTGAGC
GGCACTCTGA TCGATGCGCA ATCCAGGCAG CCGATCCGCA ATGCGACTAT CATTGCCACG
CTTAATCTTC AGAGCAGCGA TGTGGCAATG ACACGGATCG ATAATAGTTC CGATGGCTCC
TTCACCCTTG AAGGAATTCC GGAGCAAGGC TACCTTCAGG TGCTGGCGCC GGGGTATCGT
AAAGCGGTCA TCGAATTGCG CCCCGGCAGT GTGCCGGCAA CGATCGAGCT TGAGCCGTTC
TACTCGAAGG CGCTCTATGT CACCGCAGCC GTTGCATCGC GCTGGAATCT GTTGATGAAG
TATTTCGACA TCATCGATGC GACTGAATTG AACGCCATCG TCATTGATAT CAAGTCGGAT
CTGCGCGATG ACCTGGGGTT GGTGTACTAC GATTCGCAGG TTCCCATAGT GCGCGAATTG
GGGACATTCA AACCCTACAT GGATCTGCGC GCCATCCTCA ATGAAGCCAG ACGTCGCGGC
ATCTACACGA TTGCGCGCGT TCATATGTTC AGCCACGACA ATGTGCTTGC CGAGGCGAAA
CCGGAGTGGG CAGCGAAGGA TCGCACCACC GGCGGAATCT TCTACGATTA TCCCGCTCCG
AGTATTCGCT ACGCCTGGCT CGACCCATGG AACGAGAACG TCTGGGACTA TAACATTCAA
CTATCGGTCG AAGCGGCGCT ACTTGGCTTT GATGAAATTC AGTATGATTA TATCCGCTTT
CCGTCACTCG AATTTTCGCC GACCGACAAG GACCGTCTGC TCCTCTCGCG CGAAGGAACG
CCCGAAGAAC GCTGGGCAAA TATCACCGAA GTGCTCAAAC GCTCGCATCG CGCGATCAAT
GGCGCCGGTG CATTCTTTTC GGTTGATGTC TTCGGCTATA CTGCCTTTGG TCCTTCGAGA
TTGCTCGGAC AAAACCTGAG CATGATGGCG GAGTATACCG ATTACATCAG TCCAATGATC
TACCCGTCGC ACTTCAATCC GGGCGAATTT GGCTTCGATA ATCCGGCAAA ATATCCTTAC
GAGGTCATCC AGAAGTCTAT GAGTGCGGCG TTCAAGCAAG TCGAGGGAAA ACGCGCGCTG
CTCCGCCCCT GGTTGCAGGA CTTTACGCTT ATCTGGGTGC CGAAGGAACT GTTGGTCGAA
TATACGCCAG CTGAGGTTCG CGCGCAGATC CGCGCTGTTG AGGAGTTCGA CGCCAGCGCG
GGCTGGATTC TGTACGACTC GACGAATGTG TATCACGTCG AGGCGCTGAA GCCGGCGGAG
TAG
|
|---|
| Protein sequence | MRWIRGCALA AVSILALIVA ACSQPAVPLT GTIADAYTGK PVVATLTIGD LQVTTDANGV
YQIDRWSARD VIKVVASGYE PIEINLSTLP NLERPSPPAV TLEPVQVRPN TLSGVITDLY
TGMPVAGALV QASETISATT DAEGRYVLTG VPETFRVTIT ADGYAPVVSD VARTTLFDAA
IRPDTLRGAV TDGYTGRPIA GASVALGDLR ATTDSNGQYV LRGVPEKGTM TISARGYARL
DQPVERVTTL DVALRPDTLS GTLIDAQSRQ PIRNATIIAT LNLQSSDVAM TRIDNSSDGS
FTLEGIPEQG YLQVLAPGYR KAVIELRPGS VPATIELEPF YSKALYVTAA VASRWNLLMK
YFDIIDATEL NAIVIDIKSD LRDDLGLVYY DSQVPIVREL GTFKPYMDLR AILNEARRRG
IYTIARVHMF SHDNVLAEAK PEWAAKDRTT GGIFYDYPAP SIRYAWLDPW NENVWDYNIQ
LSVEAALLGF DEIQYDYIRF PSLEFSPTDK DRLLLSREGT PEERWANITE VLKRSHRAIN
GAGAFFSVDV FGYTAFGPSR LLGQNLSMMA EYTDYISPMI YPSHFNPGEF GFDNPAKYPY
EVIQKSMSAA FKQVEGKRAL LRPWLQDFTL IWVPKELLVE YTPAEVRAQI RAVEEFDASA
GWILYDSTNV YHVEALKPAE
|
|---|
| |