| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2665 |
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| Symbol | |
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| ID | 5540147 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 3434895 |
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| End bp | 3436808 |
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| Gene Length | 1914 bp |
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| Protein Length | 637 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640894787 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_001432754 |
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| Protein GI | 156742625 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.266574 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCGGCG CCGAGCGTGT CCGATTGCTG CTCATCGAAG ACGATGAATT GCACATCGAA
TTGATCCAGC GCGCCTTTGA ACCCTGGCAG TCGCTGTTCG ATCTGACGGT TGCGCATACG
CTGCGGGAAG CGCGCGCGCT GTTGGATGAT GACGCTTTCC GATTCGATTT GCTTATTTGC
GACTGGCGAT TACCCGACGG GGACGGGCTG GAATTGCTCG ATCCATCAGA CCCGCTGCCC
CTTCTTGTGA TGACCGGCTA TGGCAATGAG CGGGTAGCGG TGGAAGCAAT TCGCGCCGGC
GCGCTCGACT ATATCGTCAA GAGCGAAGCC GCATTCATCG ATCTGCCGCG TGTCGCGCAG
CATGCACTGC GCCAGTGGCG GGCGATCCAG ACGCAGTATC GCACAGAACA GGCGCTGCGT
GAGATCGAGG CGCGTTATCG TCTGATTACC GAAAACACCT CTGATCTGAT CGCCATCCTC
GACGAACAGC ACCGTTTCCG GTACGTCAGC CCCTCCGCCG TCAACCTGCT GGGGCGAACT
CCTGAGGAAT TGATCGGGCA TGACGCCTTT GATGATCTCC ATCCTGATGA TATGCCCAAC
AGCGCGGCAT ACTGGCAGGA GATCGCACTG CGCAAACGCA CCACGGCAAC CTTCCGCTAT
CGTCATGCGG GCGGTTCCTG GCGCTGGTTC GAGTGCGACA TCAAAGCCGT CGTTCAGGAC
GGCGCACCTG CCGCCATTGT GATCGCCCGC GATATTACGG CGCGCCGTGA ACTGGAAGAA
CGGTTGCTCC AGATGCAAAA AATGGACGCG CTTGGTCGGT TGTCGGGCGG AGTCGCACAC
GATTTCAACA ACCTCCTGGC AGTAATCGCC GGATGCACCG AATTGGCGCG CCAGTCGCTC
CCGGATGACC ATCCGGCGAT GCTGGAACTG ATCGAAATTC AGCATGCTAC CGAGCGCGCC
TCGGCGCTGA CCCGTCAGTT GCTCGCCTTC GCTCATCGTC AGAAGTTCGA CCCGCGCCCG
ATTGATTTGA ATGCGCTCAT TCAGGACATG CACAAACTGT TGCGCCGCCT GATCCGCGAG
GACATCACCC TGCACACCCG CCTCGCTCCC GATCTCTGGC ACGTGCGCGC CGATCCAGGG
CAAATTGAGC AGGTGCTGGT AAATCTTGCC GTCAATGCGC GCGATGCCAT GGCTGTCGGT
GGCGCCCTCA CGATTGCAAC AACCAATGTC GTGGCTGATG AGGCGTTTGA ACGCCGCTAT
CCTTCCCTCA AGGCCGGAGA GTACGTTTGC CTGACTGTCA GCGACACCGG CATTGGCATG
GATGAAGAGA CGCGCCGGCG CGCCTTCGAG CCGTTCTTTA CCACGAAGAA ACCGGGCGAA
GGCACAGGCT TGGGGCTGGC GACCTGCTAT GGTATTGTGA CTCGTCATGG TGGCGCCATC
GATCTGGCAA GCGAGCCAGG ATGCGGTACG GTCGTCACGA TCTATCTGCC GCGCGCTTCG
GTTGAGGGAG CGCAGGCATC CGAAACCGTC GATCAGAGCG CTGGTCTCGA CGGCTCGGAA
ACCATTATGC TGGTCGAGGA CGATCCGGCA GTGCGTTCGC TGGTGGCACG GACCCTCCGC
GCGCACGGGT ATACCGTTCT CGAAGCGAGC AGCGATCAGG AAGCGATTGC CCATGCTGCA
CAGGACGCAA CCATCCACCT GCTCCTGAGC GATCACGTCA TTCCGCACAC GAGCGGTGTT
GCCCTGGCGG ATCGTCTGAC CTTCCTCCAA CCCCGGATGC GGGTGCTGTT TATGACCGGA
TATGTCGTTG AACCGCAGCA AAACGCTCAT CGCGCCACCG ATGCGCCGGT GATCGAGAAG
CCGTTCACCC CCACCGAACT CCTGCATCGG GTTCGCGCCT TGCTGGATGC CTAG
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| Protein sequence | MTGAERVRLL LIEDDELHIE LIQRAFEPWQ SLFDLTVAHT LREARALLDD DAFRFDLLIC
DWRLPDGDGL ELLDPSDPLP LLVMTGYGNE RVAVEAIRAG ALDYIVKSEA AFIDLPRVAQ
HALRQWRAIQ TQYRTEQALR EIEARYRLIT ENTSDLIAIL DEQHRFRYVS PSAVNLLGRT
PEELIGHDAF DDLHPDDMPN SAAYWQEIAL RKRTTATFRY RHAGGSWRWF ECDIKAVVQD
GAPAAIVIAR DITARRELEE RLLQMQKMDA LGRLSGGVAH DFNNLLAVIA GCTELARQSL
PDDHPAMLEL IEIQHATERA SALTRQLLAF AHRQKFDPRP IDLNALIQDM HKLLRRLIRE
DITLHTRLAP DLWHVRADPG QIEQVLVNLA VNARDAMAVG GALTIATTNV VADEAFERRY
PSLKAGEYVC LTVSDTGIGM DEETRRRAFE PFFTTKKPGE GTGLGLATCY GIVTRHGGAI
DLASEPGCGT VVTIYLPRAS VEGAQASETV DQSAGLDGSE TIMLVEDDPA VRSLVARTLR
AHGYTVLEAS SDQEAIAHAA QDATIHLLLS DHVIPHTSGV ALADRLTFLQ PRMRVLFMTG
YVVEPQQNAH RATDAPVIEK PFTPTELLHR VRALLDA
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