| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2659 |
|---|
| Symbol | |
|---|
| ID | 5540141 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 3427714 |
|---|
| End bp | 3430518 |
|---|
| Gene Length | 2805 bp |
|---|
| Protein Length | 934 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640894782 |
|---|
| Product | ATPase, P-type (transporting), HAD superfamily, subfamily IC |
|---|
| Protein accession | YP_001432749 |
|---|
| Protein GI | 156742620 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0474] Cation transport ATPase |
|---|
| TIGRFAM ID | [TIGR01106] sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit
[TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.670527 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACGA TAGCGATACA TGAGCTGCCA ACCAGTCAGG TCTTTGCAGC ACTCGACTCG
AACCCTCAGG GATTGACCCC GGACGAGGCG CGTGAACGCC TGGCGCAGTA TGGTCTCAAC
GTCCTGCACG AACCGCCGCG CAAACCGCTG ATCCGCGCCC TGCTGGCGCA TTTCACGCAT
CTGATGGCAT GGCTGCTCTG GATTGGCGGA GGCGTTGCAT TTGTGGCGCA AACGCCGACG
CTGGGCATTG CTATCTGGCT TGTCAATATT ATTAATGGGT TGTTCAGTTT CTGGCAGGAG
TATAAAGCCG AACAGGCGAC CGCCGCGCTC CGCCGCATGC TGCCGTCGTA TGCGCGGGTG
CGTCGCGCTG GCGCAGAGAT GCGCATTCCG GCAGAGCATT TGGTTCCCGG TGATGTGCTG
TTGCTCGCCG AAGGCGACCA CATTTCAGCC GATGCGCGCC TGGTGCGCGA AACAGAACTG
CGCGTCGATC AGTCGGCGTT GAGCGGTGAG TCGCATCCGG TGCGCAAAAC TGCCGATCCG
ATCAGCGGTA TCGGTCTTTC ACACGCTGAA TTGCCAAACC TGGTGTTTGC CGGCACGAGT
GTGACATCCG GCACGGCGGA AGCCGTCGTG TTCGCCACCG GTATGCGCAC CGCGTTTGGC
GAGATTGCCC GCCTGACCCT GAGCGTCGGC GATGAACTCA GCCCCTTGCA GCGCGAAATG
GAGCGCCTGA CCCGTGTGGT CAGCGCGATT GCCGTCGGTG TCGGTTTGTT CTTCTTCGTG
CTGGCAGTCG CCATCGCAGG GATCGATCTG GCGAATGGCT TTATCTTCGC CCTGGGCATG
ATCGTCGCCT TTGTTCCCGA AGGATTGCTG CCGACCGTGA CGCTGGCGCT GGCGCTGGGT
ACGCAGCGTA TGGCGCGGCG CAACGCGCTG GTGAAACGTC TCTCCGCCGT CGAGACGCTT
GGATGCACAA CTGTCATCTG TACCGACAAA ACCGGCACCC TGACGCAGAA CGAGATGACC
GTGCGCGAGA TCTGGGTCGG CGGGCGACAG ATTTCGGTCA GCGGCGTCGG ATATGCGCCG
GAAGGATCGT TCAGTGAGTG TGGCGCGCTG CTGGAACGAC CGGCCGATGA TCCCGAGCTG
CGCCGTTTGC TGCTGGCGGC TACGCTCTGC AACGACGCCC GTCTCATTCC GCCACATACG
ATGACGCCAG AAGACCAGGG ACATTCCAAC AACGGTGAAC GGTGGAGCAT CCTGGGCGAC
CCAACCGAGG CGGCGCTGCT GGTGGCGGCG CGCAAAGCGG GTATCGACAA CGACGCCGAA
GCGCAACAGA TACCGCGCAT TCGTGAGTTG CCGTTCGAGT CGCGCCGCAA ACGGATGAGC
GTCGTCTGCC GATTGCAACC ACAGGTCGCA GCGCATCGAT CCGCCGGGTT CGTAGCATAT
GTCAAGGGCG CGCCCAAAGA AACGCTGGCG CTCTGTACAT CCTTTGCTGT CGGCAATTCC
ATTCAGCCGC TCGACGAAAC GCAGCGCGCA GACATCCTCG CAGCCAACGA TCAGTATGCG
CGCGCCGGGT TGCGCGTGCT GGCAGTTGCG CAACGTTTGC TGAATGCTAT GCCCGCCTCG
TTCGAGGCTG AGCATATCGA ACGTGATCTG ACATTCCTCG GTCTGATCGC AATGATGGAT
CCGCCACGTC CAGAAGTCGA ATCAGCGGTG GCGACGTGTC ATGCCGCCGG GATTCGTATT
ATCATGATCA CCGGCGATTA TGGACTGACG GCAGAAAGCA TCGCCCGGCG CATCGGCATC
ATCCGTGGCG CGCAGCCGCG TATTGTGACC GGCGCTGAAT TGGACAGCAT GGATGACGCG
GCGCTTCACG ACGCACTGAC TGATGAAGTG CTCTTCGCGC GCGTCGCGCC AGAGCACAAA
CTGCGCGTCG TCAGCGCGCT GCGCGCACAG GGGCATGTCG TCGCTGTGAC GGGTGATGGC
GTCAACGACG CTCCGGCGCT CAAACAGGCG GATATTGGCG TGGCGATGGG GCGCGCGGGA
ACCGACGTCG CGCGGGAAGC GGCGGACATC ATTCTGACCG ACGACAATTT CGCCTCGATT
GTCAGCGCTG TCGAAGAAGG ACGCGCAGTC TACGCCAATA TCAAAAAATT CGCCACCTAC
ATCTTTACCA GCAACACTCC CGAGGCGGTT CCATTCGTGC TGTTCGCCTT CAGCGGCGGG
CGTATCCCGA TTGCGCTGAA CGTTATGCAT ATTCTGTCGA TTGATCTGGG AACCGACATC
GTTCCGGCGC TGGCGCTCGG CGCCGAACCG CCCGAACCCG GTATCATGGA GCGTCCGCCG
CGTAGTTTGA AGGAACATGT GGTCACCGGC GCTATGCTGC GCCGCGCCTA TCTCTGGCTT
GGACCGGTGC AGAGCCTGGC AGCAATGGCG GCATTCTACT ACCAGTACTG GACGAATGGG
TACTGGGGGC AGTGGCTCGA CCTTCCGGCA GACGGTCCGT TGTACCGTTC GGCGACGGCA
ATGGCGCTGG CGGCAGTGGT GACGACACAG ATCGGCAACC TGTTTGCGCA GCGAAGCGAG
CGCCTTTCGG TTCTGCGCCT GCCTCTAATG GGAAACCGGT TGATCTGGAT CGGCATCGCT
ACAGAAGTGA TCCTGATCGT GGCGATTGTG TATGTGCCGT TTTTGCAGGA TGTCATTGGG
ACGGCGGCGT TCAACCCCGT CAACTGGATC GTTCTCGCGC TCTGGGCGCC AGCATTGCTA
CTAGTCGATG AACTGCGCAA ACTGGTGATC GCCCGGCGAA AGTGA
|
|---|
| Protein sequence | MQTIAIHELP TSQVFAALDS NPQGLTPDEA RERLAQYGLN VLHEPPRKPL IRALLAHFTH
LMAWLLWIGG GVAFVAQTPT LGIAIWLVNI INGLFSFWQE YKAEQATAAL RRMLPSYARV
RRAGAEMRIP AEHLVPGDVL LLAEGDHISA DARLVRETEL RVDQSALSGE SHPVRKTADP
ISGIGLSHAE LPNLVFAGTS VTSGTAEAVV FATGMRTAFG EIARLTLSVG DELSPLQREM
ERLTRVVSAI AVGVGLFFFV LAVAIAGIDL ANGFIFALGM IVAFVPEGLL PTVTLALALG
TQRMARRNAL VKRLSAVETL GCTTVICTDK TGTLTQNEMT VREIWVGGRQ ISVSGVGYAP
EGSFSECGAL LERPADDPEL RRLLLAATLC NDARLIPPHT MTPEDQGHSN NGERWSILGD
PTEAALLVAA RKAGIDNDAE AQQIPRIREL PFESRRKRMS VVCRLQPQVA AHRSAGFVAY
VKGAPKETLA LCTSFAVGNS IQPLDETQRA DILAANDQYA RAGLRVLAVA QRLLNAMPAS
FEAEHIERDL TFLGLIAMMD PPRPEVESAV ATCHAAGIRI IMITGDYGLT AESIARRIGI
IRGAQPRIVT GAELDSMDDA ALHDALTDEV LFARVAPEHK LRVVSALRAQ GHVVAVTGDG
VNDAPALKQA DIGVAMGRAG TDVAREAADI ILTDDNFASI VSAVEEGRAV YANIKKFATY
IFTSNTPEAV PFVLFAFSGG RIPIALNVMH ILSIDLGTDI VPALALGAEP PEPGIMERPP
RSLKEHVVTG AMLRRAYLWL GPVQSLAAMA AFYYQYWTNG YWGQWLDLPA DGPLYRSATA
MALAAVVTTQ IGNLFAQRSE RLSVLRLPLM GNRLIWIGIA TEVILIVAIV YVPFLQDVIG
TAAFNPVNWI VLALWAPALL LVDELRKLVI ARRK
|
|---|
| |