| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2642 |
|---|
| Symbol | |
|---|
| ID | 5540124 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 3405794 |
|---|
| End bp | 3406516 |
|---|
| Gene Length | 723 bp |
|---|
| Protein Length | 240 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640894765 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001432732 |
|---|
| Protein GI | 156742603 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0107943 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTTCGCC GATCATTTGT CATGCTTGCG GCGCTTATCG CACTTGCGCT TGCATCGCTC
ATCTCTACTG CTCCGGCGCA GGCTGCAGGC AACGCGAAGG TCTATGTTGT CCATGGCATT
CCCGGACGCG ATCTCGGTCT TCAACCCAGC CTGCCGGTCG ATGTATCGGT CAACGGCGCG
TGTGCGCTGA CGCGCTTCAA GTACACAGAC ACAGTCGGTC CAATTGAGCT GCCTGCCGGA
TCTTACGACA TCAAGATCCA TCTTTCCGCT TCGCTGTCCA CGCCGCCGTG CAGTGGGCCG
GTCGCAGTTG CTGCAACGGT TCCGTTCGCC AGTGGTGAGA ATGCAACGAT TGTTGCCCAC
CTGACTGACA GCGGCGCACC GACGGCATCG AAGTTCATGA ACGATGTGAC GCCGGCAAGC
GCCGGCAATG GCCGCATCAT GGCACGTCAT ACTGCGCCGC TGCCACCGGT TGACCTGATC
GTCAAGACGT TCAGCTCTCC GGCAACGCTG GCAGTCATTC CGAACCTCGC CAATGGTCAG
CAGGTGTCGG CTGAACTGCC GGTGAACACG CGCTTCCGCG TCCAGTTCGC GCTTGTCGGA
ACAACCGATC CGGTGCGGGT TGGCAGTGTC AAGGCGCGCC CAGGTGAAAC GGTGATTTAC
CACGCCGTCG GTTCGGTGCG CAAGAATACC TTTACGCTCA TCGAACTGCG CGTCCAGCAG
TAA
|
|---|
| Protein sequence | MVRRSFVMLA ALIALALASL ISTAPAQAAG NAKVYVVHGI PGRDLGLQPS LPVDVSVNGA
CALTRFKYTD TVGPIELPAG SYDIKIHLSA SLSTPPCSGP VAVAATVPFA SGENATIVAH
LTDSGAPTAS KFMNDVTPAS AGNGRIMARH TAPLPPVDLI VKTFSSPATL AVIPNLANGQ
QVSAELPVNT RFRVQFALVG TTDPVRVGSV KARPGETVIY HAVGSVRKNT FTLIELRVQQ
|
|---|
| |