| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2633 |
|---|
| Symbol | |
|---|
| ID | 5540115 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 3393910 |
|---|
| End bp | 3395751 |
|---|
| Gene Length | 1842 bp |
|---|
| Protein Length | 613 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640894757 |
|---|
| Product | copper resistance protein CopC |
|---|
| Protein accession | YP_001432724 |
|---|
| Protein GI | 156742595 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1276] Putative copper export protein |
|---|
| TIGRFAM ID | [TIGR01297] cation diffusion facilitator family transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCATCCG ACCCTGAAAT CAAAATCGCC AGACTGCGCT GGAGCGCCTG CGCCGCACTG
CGCCGATCCG TGATCGGCGT GATTGCACTG CTGATGCTGT TCACAACGGT CGCCTATGCC
CATCCGCAGA TTGTGTCGGC GGAACCGGTC CCCGATGCCC GGCTCAACAC TGCGCCCCCT
TTCGTGCGGA TTAAGTTCAA CGAACCAATC GAGGAATCGT TCGCGTCGGT GCAGGTTCTC
GACGCAACGG GGCGCGCCGT TGATCGCGGC GATGGCGGTC GGGCATCGGA CGATCCGCGG
GCATTGCACG TCAGCCTGCC GCCGCTCGAT CCCGGCGTCT ATACGGTAGC ATGGCAGGCA
GTGGGGCGTG ATGGGCATCT GGTGAAGGGA TATTTCGTGT TTACCATTGC CGGCGCGCTC
CCATCGCAAC CCTCTGCGTC CGTTCTCACG CCGCGGCCGA CCGACGCTCC GCTGTTCGCG
GGCGATGAAT CGGAAGCGCC ACTTCTTCCG TCCGGTTCGA CGACGGCGCC ACCGGTTGAT
CCGCTGGCAC TGCTGCGTAG CATGATGCTG ATCGGCGCGG TGCTGGCAAT CGGCGGACAG
GTTTTTCGTT CAGTGGCGCT GACGCCGGGC GGTGGGCGAC TGGCGGCGCA GATGCATGGT
TTGATCAGCG GAGCGCTGGT GCTGCTGCTG GTTGCCACAC TCCTCTTCTT TATCGCGCAC
GCCGGCGCAA TCGCCGGTGT GACAACGCCG GAAGCACTCA TCACCGTGGC GCGGGATACC
CGCGCGGGGC AGGCGCTTAT TGGACGGATG GCGCTGACTC TGGCGTTCCT CATCATCCTG
CGGCACTCCG GTCTCTGGGC GCGCGCAGGA AGCGTGGCGA TTGGCGGATT GATCCTGTTG
ACCTTTTCGA TCAGCGGGCA TGCCGCAGCA ACGATGCAGC CATTCATAGC GATCATGATC
GACTGGGTGC ATCTGGCGGC AGCAACCATC TGGGTTGGCG GGTTGACGGC GCTGACGCTT
GCGCTGATCC AGAACAATCG AGACGCGCCC GATCCACAGG CGATGAGTCG CTCACTCATC
CGCTTTTCAT GGCTTGCGCT TGCGTCCGTT GGGGCATTGA CGATCAGTGG CGCCCTGGCT
GCGTGTTCCT ATCTAAACGC TGTCGGCGAC CTGTGGCAGA CTGACTACGG ACGCGCACTG
CTGGCAAAGA TCGTATTGTT TGCGATCCTT ATTGGCTTTG GTGCATATCA TCTGGCATTG
ACGCGCGCGC ATACAACAGA GCGCCTGACA ATGTCGGCAA TCGCGCTGGC GCAACGGATG
CGCCGCTCAC TTCCACTCGA AGCAGCAATC GCCACGCTTG TGGTCGGTAT CGCCGGGGTA
CTGACGAGCC TGCCACATCC GGTTGCTGCA CCGACGGCGC CGCCGGTTGT TTCCGCCACT
CCTCTCGCTG CTGAACCAGC AAGCGCCATC GTGGAGCAAA CCGCCACGCC GGACGAACCC
ACGCCGTCTC TGCCACAGCC ATTCACCGCC ACACAGTCGG CGGGCGATCT GCGCGTCGCG
CTTCGGGTCG AACCCGCCAT CATCGGGAGC AACCTGATGC GCATCACCGT CACCGACGCA
GCGAACAAAC CGCGCGACGT GCAACGTGTC AGAGTGATGC TCCGTCTTAA CGACAGAGAC
ATTGGCGAAA CTTCTGTTAT CGCTGAGCCG GACGGTTTGG GAAGGTACAT CGTTCGCAAC
CAGATGCTCG GTATTGCGGG CATATGGCGG GTGCAGGTGC AGGTGCGGCG TATCGACGCC
GATGATGTCA CGGCTGACTT CCTGTTACCG ATCCGCAGGT AG
|
|---|
| Protein sequence | MSSDPEIKIA RLRWSACAAL RRSVIGVIAL LMLFTTVAYA HPQIVSAEPV PDARLNTAPP
FVRIKFNEPI EESFASVQVL DATGRAVDRG DGGRASDDPR ALHVSLPPLD PGVYTVAWQA
VGRDGHLVKG YFVFTIAGAL PSQPSASVLT PRPTDAPLFA GDESEAPLLP SGSTTAPPVD
PLALLRSMML IGAVLAIGGQ VFRSVALTPG GGRLAAQMHG LISGALVLLL VATLLFFIAH
AGAIAGVTTP EALITVARDT RAGQALIGRM ALTLAFLIIL RHSGLWARAG SVAIGGLILL
TFSISGHAAA TMQPFIAIMI DWVHLAAATI WVGGLTALTL ALIQNNRDAP DPQAMSRSLI
RFSWLALASV GALTISGALA ACSYLNAVGD LWQTDYGRAL LAKIVLFAIL IGFGAYHLAL
TRAHTTERLT MSAIALAQRM RRSLPLEAAI ATLVVGIAGV LTSLPHPVAA PTAPPVVSAT
PLAAEPASAI VEQTATPDEP TPSLPQPFTA TQSAGDLRVA LRVEPAIIGS NLMRITVTDA
ANKPRDVQRV RVMLRLNDRD IGETSVIAEP DGLGRYIVRN QMLGIAGIWR VQVQVRRIDA
DDVTADFLLP IRR
|
|---|
| |