| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2619 |
|---|
| Symbol | |
|---|
| ID | 5540101 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 3378521 |
|---|
| End bp | 3381517 |
|---|
| Gene Length | 2997 bp |
|---|
| Protein Length | 998 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640894743 |
|---|
| Product | PKD domain-containing protein |
|---|
| Protein accession | YP_001432710 |
|---|
| Protein GI | 156742581 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.735156 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGTGTG TGCGTCGTTG GATGCTGGTG TGGACCCTGA TGGTCGTACT CCTTGGCGGA
TTGCCCGCCG GACCGGTCGC TCTTCGAGAT GAACCGGCGG CTCTGGCGCA GAGCACTCCC
GAAGCACCGC AGCCGGGCGA TGTGTTTCGT GAGTTTGTAT TTCCGCAGCG CCTGACTCTC
TGTTTTCGAC CATCGAACCC TGCATCGTGC AACAATGTTC CGAGAGAGCG TTCCGCCGGG
CTGACGTTCA ATCCGGCAGG CGCAACGCGG GCTGAACTGG CCGTCGAATA CTGGGGCGGA
CACATCGGCA CACGCCAGCA TTTCCGGGTC AATAGTCAAG ACTACTGGCA GCCGCTGCCA
CCGATCCAGA ACGTTCCCTC CGGCGCTCGA CAGCAGTGTT ACTTCCGCAC CATTCTGGGG
GGCACGCTGC CGCTCGATTT GAGTCAGTTG CGCAATGGCG AAAATCGTTT CCGATTCACC
ATTGAGCATA ACAATCAATA CGGCCAGGAT ACGCAATGTC CCGGCAACTT TGGTTGGGGT
ACAACCTATA TCTATGGCTT TACTGCGCGG CTGTACTATA CGCCTGGCAG CATCCCCGCT
CCGAGCGGCA GCATTACCTC ACCCGCAGAG AACACGTCCA TTGGTGAGAT GCCGCAGATC
ACCGTCCAGG CAACGCCTCC CGCCGGAAGG ACGATTGCGC GCGTCGATGT GATCGGCGAA
TACCTTGACT ATGACTGGGA TGGCGACGGC GTGCTGCGCG AGTGGCAGTA TCAACTGGTG
CGTGGGCAGA TGCAACGCCA TATCGGTTGG GCAGTGCGCG ACGGCAGTGT GTACCGTGTG
GTGTGGAATA CCACCTGGAT ACCGGATCAG GTCGATGCCG ACGGAAACCT GCTGCCGGTG
CGCCTGATGG CGCGGATCAC CGACAGTGAC GGGGTTTCGT TCATGACTGC CGCGCGCACG
GTCTGGTTTC AGCGCAGCGG GCGCCAGGTG CGGATGTACA CCTCCTCGCA CGACCGCGAT
AACCAGCGTG TCTACGGCGT ACCGCAGAAT TTCGGTCCGC GCAATATGAG CACGTCAACG
CCGCCGCTTA CGACAACCAT CACGATTGCG GACAACCCGG CCGGCGCCGC CTCAGCGCGC
ATGATCATTC ATACCTGGGC AGGCGACCAG ACCAAAGAAG AGCCGACGGT GCGCGATCGA
ATCACGATCA ACAATGCGAC AGTTGTCAAT GTGAATGGCT CTCCCCCTAC CCCGCCAATC
GGCGCCGATC ATCACTGGAG CTTCGACTGG CGCGATGTAC CGGTATCGGC GCTGATCCAG
GGGGATAACC TCTTCGGCGT GTGGACCAAT CGCCAGGGAC ATCATCTGGA GATCCAATGG
CCCGGTCCGG CAATCATGGT CGAACGAGTT GATGCACCAT ATGCGCACGA TCAGGTCATC
GTCACCCCGG AAGACACCCC GATCACCATT ACGCTGACCG GCTCGACGCC TTTTCTCAAC
CCGCTGACGA TTACCCCAAG CACGGGTCCG TCGCGCGGAA CGCTTGGCGG CACAGGCGCC
ACGCGCGTCT ATACCCCACA GACCAATTAT AACGGCTTGG ACCGGTTTGA CTTTCGCGTT
TTCAGCAGTG ATGGCGAGGA TACCGGAACC ATTCATATTG TCGTTACCCC GGTGAACGAT
GCACCGGTGC TGAATCCTGC GCCGCGAACG TTCCCCGCCA TTCCTGAAGA CGTTCCCGAT
ACCGGCAATT CAGGAACGAC GGTGGGTGCA TTGCTCAGCG GTACGGTCAC CGATCCCGAC
CCTGATGCGC TTCCCGCAGG GGTGGCGCTG ACCGGCGCGA GCGGCAATGG AACCTGGCAA
TACTCACTCG ACGGCAATGC CTGGCTGGAT GTCGGCACAG TGGCGCCAAC CAGCACCCTG
CTGCTCGAAC CATCGGCGCG GCTGCGGTTC CGCCCGGCGC CGAATTTCTT TGGTCAGGCA
AGCATCACCT ATCGCGCCTG GGATCGTAGT GATGGACTCG CCGGCGGTCA ACGCAACGTC
AACCCCGGCA ACGGTGGCGG AACCAGCGCC TACAGCAGCG TCACGGCAAC TGCGACGGTT
ACCGTGACAC CGGTTAACGA TCCGCCAGAG ATCGCACTGT CCGATGGCGT TACAACAACC
CATGTTCTGA CGCCGTTCAG CATCAGCGGT TCATCCTTCG ACATTGATAA CGAAACATTG
ACCGTGACCG TCAATTTTGG CGATGGCGCA TCGGCGCAGA CCACTGCGTC CCCCCCGGAT
CGAGCATTCA CATTCACCCA TGCCTATCAA CGCAGCGGAA CCTACACCGT CACAGTGACG
GTGCGCGACT CGGAGAACGC GACCGCCAGT TCCTCATTTG TGATGCGCGC AATCAACGAC
CCGCCAACTG TGACGTTCAA TGCCGATAAC CCTGCAACTG CGCATATTTT CACCCCGTAC
AACGGCGCCG GTTCGTTCTT TGATGCCGAG AACGACAATA TTGCTCTTCA GATTGACTTT
GGCGACGGCA CAGCGACTCA GTCGCTCACT GCTTCGCCGG ATGGCGCCTT TACCTTCAGC
CATCAGTACC AGCGTAGCGG AACCTACACG ATCACAGTGA CCGCGCTCGA CACCGAATCC
GCCACCCGCG CAACACAGGT TGTGCGGGTC GTCAATGACC CGCCAACCGT GCGGGTGAAC
GCCCCGGGTC AGGTCCGGCT TGGTGAGACG TTCATTGGTG CAGGCTCATT TGCCGATATT
GAAGAGGTTG CGCTGAGTTC CTGGACTGCG ACCGTCGATT ACGGCGATGG CGGCGGACCG
CAACCATTGA CGCTGTCCGG CGATAAGACG TTCGTTCTGA ACCATGCCTA TGCAGAGGAA
GGAATATATA CCGTGACAGT GCGCGTGACC GATGTCGAGG GCGCTGTTGG AGTTGCAACC
ATCTCTGTGC GTGTATCGCG GTTCTTCTTT GTGCATATTC CGCTGGTTAC ACGATAG
|
|---|
| Protein sequence | MLCVRRWMLV WTLMVVLLGG LPAGPVALRD EPAALAQSTP EAPQPGDVFR EFVFPQRLTL
CFRPSNPASC NNVPRERSAG LTFNPAGATR AELAVEYWGG HIGTRQHFRV NSQDYWQPLP
PIQNVPSGAR QQCYFRTILG GTLPLDLSQL RNGENRFRFT IEHNNQYGQD TQCPGNFGWG
TTYIYGFTAR LYYTPGSIPA PSGSITSPAE NTSIGEMPQI TVQATPPAGR TIARVDVIGE
YLDYDWDGDG VLREWQYQLV RGQMQRHIGW AVRDGSVYRV VWNTTWIPDQ VDADGNLLPV
RLMARITDSD GVSFMTAART VWFQRSGRQV RMYTSSHDRD NQRVYGVPQN FGPRNMSTST
PPLTTTITIA DNPAGAASAR MIIHTWAGDQ TKEEPTVRDR ITINNATVVN VNGSPPTPPI
GADHHWSFDW RDVPVSALIQ GDNLFGVWTN RQGHHLEIQW PGPAIMVERV DAPYAHDQVI
VTPEDTPITI TLTGSTPFLN PLTITPSTGP SRGTLGGTGA TRVYTPQTNY NGLDRFDFRV
FSSDGEDTGT IHIVVTPVND APVLNPAPRT FPAIPEDVPD TGNSGTTVGA LLSGTVTDPD
PDALPAGVAL TGASGNGTWQ YSLDGNAWLD VGTVAPTSTL LLEPSARLRF RPAPNFFGQA
SITYRAWDRS DGLAGGQRNV NPGNGGGTSA YSSVTATATV TVTPVNDPPE IALSDGVTTT
HVLTPFSISG SSFDIDNETL TVTVNFGDGA SAQTTASPPD RAFTFTHAYQ RSGTYTVTVT
VRDSENATAS SSFVMRAIND PPTVTFNADN PATAHIFTPY NGAGSFFDAE NDNIALQIDF
GDGTATQSLT ASPDGAFTFS HQYQRSGTYT ITVTALDTES ATRATQVVRV VNDPPTVRVN
APGQVRLGET FIGAGSFADI EEVALSSWTA TVDYGDGGGP QPLTLSGDKT FVLNHAYAEE
GIYTVTVRVT DVEGAVGVAT ISVRVSRFFF VHIPLVTR
|
|---|
| |