| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2616 |
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| Symbol | |
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| ID | 5540098 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 3375539 |
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| End bp | 3376315 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640894740 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001432707 |
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| Protein GI | 156742578 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCGTT CGCTCGAAGG AAAAGTCGCA GTTGTGACCG GCGCCAGCCG CGAAATCGGT
GCTGCCATGG CGGAGATACT GGCAGCGCAT GGGTGCGCGG TGTTGGCGGC GCACTTTGGT
GAGGCAGAAC GCGCAACAGT GGTCATCGAA CGCATCCGCG CAACGGGCGG GCGCGCACTG
GCATACGATG CCGATCTGTC GAGCATTACG GCGAACCGGG CGCTGATTAC CTGTGCAGTA
GACGCCTTCG GGCGCGTCGA TATTCTCGCG GCGAATGCCG GTCTCACAAT CAGCGCACCC
TTCCTCGATA CAACCGAGGA GCAGTGGGAT ACGCTTTTCG ATCTGAATGT CAAAGGGTCA
TTCTTTGCGG CGCAGGCGGC AGCGCGCCAG ATGATCGCCC AGGGCAACGG CGGGCGGATC
GTCTTTTCCG CGTCGGTGAC CGGTGTGCAG GCAATTCCCG GATTGAGCGC CTATGGCATC
ACCAAAGCGG CGCTGCGGCA CATGGCAAAA ACCCTGGCGT GCGAACTCGG TTCATATGGC
ATCACCGTCA ATGCGCTGGG CATCGGCGCC ATTCTGAATG AGCGCAACCG AACCGATGAC
CCGGAGTACG AAACGCACTG GGGAAGTGTG ACCCCGACCG GGCGCGTCGG TCTGCCCGCT
GATGTTGCGC AGGCGCTGCT CTTCCTGGTA TCGCCGGGGG CAGCGCACGT CACCGGTCAG
ACGCTCATTA TCGACGGCGG GTGGACGTTG ACCAGCCCGC TGCCGCCGTC TTCCTGA
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| Protein sequence | MTRSLEGKVA VVTGASREIG AAMAEILAAH GCAVLAAHFG EAERATVVIE RIRATGGRAL
AYDADLSSIT ANRALITCAV DAFGRVDILA ANAGLTISAP FLDTTEEQWD TLFDLNVKGS
FFAAQAAARQ MIAQGNGGRI VFSASVTGVQ AIPGLSAYGI TKAALRHMAK TLACELGSYG
ITVNALGIGA ILNERNRTDD PEYETHWGSV TPTGRVGLPA DVAQALLFLV SPGAAHVTGQ
TLIIDGGWTL TSPLPPSS
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