| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2604 |
|---|
| Symbol | |
|---|
| ID | 5540086 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 3357153 |
|---|
| End bp | 3363740 |
|---|
| Gene Length | 6588 bp |
|---|
| Protein Length | 2195 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640894728 |
|---|
| Product | alpha-2-macroglobulin domain-containing protein |
|---|
| Protein accession | YP_001432695 |
|---|
| Protein GI | 156742566 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2373] Large extracellular alpha-helical protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAGA ATCCACAATT CCCACTGCGC GCGATCATTG CGGCAGGAAT CGGGGTGATC
CTGATTATCG CCGCTGTTCT TGCGGGTCCG CTCCTTCTGA GCGCACCGCA GGTCGTGCGC
ATCGAGCCGC CGGATGGCGC AGAGATGGTC AACCCACAGG CGCCGTTGCG CATCGAGTTC
AGCCAACCGG TCCAGAAAGA CTCGCTTGCC GCAGTGTTGC GCATTGAGCC GTCGGTTGAC
CTCACTATCG ACATGGAGGG GAATAGTGCG CTGGTGCGTC CGACCGGCGG GTTGCAGTAC
GGCGCGGAGT ATACACTGAC CGTCGGCGCC GGTGTGCGCA ATGCGCTTGG GCGCGCAACC
GAGAGCGCGC AGACGGTCCG TTTCCGCACC GCGCCCTATG TTACCGTGCG CGAGGTTTTT
CCCGCTGACG GCAGCGCCGA TGTTCCGCTC GAGACCCTCA TTATGGTCGA GTTCAATGCG
CCGGTAGTGA GCGCCGAGGC TATCGCAGCA GCGGCTGACG ATCCGCGCCG CGCCGATGAG
TTGCCGCAGC CGCTGACACT CACTGCGGGC AGCGACCCGA AACCGGTCAA TGGCGTTGGA
CGCTGGCTTT CGCCGACGCG CTTCGGCTTT TCGCCAGAGG ACGGATTGCG CCTGGCAACG
ACGTATCGTG TCACCTTGCG TGCTGATCTG ACCCCAGACG GCGCAGCGCG GATGGAACAA
CCGGTCAATT GGAGTTTTAC GACCGCAGCA CAGTTGCTGA TCGGCACACG TCCGTTTGAC
GGCGAAATCG ATGTTGCAGC GGATCGTCCT ATCGAGATTC GTCTTCATCG TGACATCGAT
CCTGCCTCGG TTGGCGCGAG TTTTCGCCTC CTCGACGCAG GCGGTGCGGC AGTCGCAGGG
ACGGTCGAAA CGTTTGAGGG CGGCGTTCGC TTTAAGCCCG CAGCGCCGCT CCAGCGCGGC
GTGCGCTATC GGGCGATGCT TGAACCCGGC GTCAATACCC GAACAGGCGC CATCCTCAAC
GCCAAACCGT TTGAATGGAC GTTTGTCGTC ATCGGCGATC TGGAAGTGCA ACAGGTTGAG
CCTGCCGGCG ATACACGCGA CGTTCCTGTT GACATCAAGC GCATTAGCGT GCGCTTCAAT
CATCCGGTCG TGCCGGTAGT TGATGTTGCT GGGAGCGGCG GATTGCCCGT GGCGGCGACG
ATTGAGCCGC CGGTGCAGGG TGTTGCGCGC TGGATCGATA CGTCGACGTT CGTTTTTTCT
CCGACGGTCC CCCTCGACTC GTCAACCGAT TATCGGGTGC GGGTGGCGGC GGGGTTGACC
GACCAGACCG GCGGCGTGCT GCGCAACGAG TATGTCTGGT CGTTCCGCAC GATTGATCCG
GCAGTGAACG ATGTTCAGCC GACATCGGCG TATGCTGCGC CAACGACCCC GGTGACGGTG
ACATTCAACC AGGCGATGGA CCTGGCATCG CTGCGTAGCG CACTGCGCGT TATACGCGCC
GACAACGGCG CGCAGGTTGC CGGAACAATC GCCGTCAGCG GAACCAGTGC GATCTTCCGA
TCCGATGCGC CACTGGAGCG CGGCGTTGAC TATCGCGTCG TCATCGATGC CGGCGCGCGG
TCGGCGCGCG GCAATGGCGT ACTGGATCAA CCGTTCAGCA GTTCCTTCCG GGTTGCACCG
CTGCCGGCGC TCGTCATGAC CGATCCGGCG CCGGGCGCCA CCTTTTCTCC CAGCGCTGGC
GGCATTCGGT TGATCTTTAG CACACCAATG GATTGGGACA CCGTTGGTCG CGCGCTGGTT
ATTGAGCCGA AGCTGACAGA TGTGTTCACT TCTTCCTATG AGACAGATTT CTACATCTAC
AGTCAGTTTG AACCCGAAAC GGAGTATCGT ATCACCGTCG GCGCTGCTGC GCGTGACCTC
TATGGCATGG CGCTCGGTCA GGACGCAACA GTGACCTTCC GCACCGGTCC GCGTGAACCG
TTTGTCGGGT TGATCGGCGC CTATCGCGCA GGGTTCTACC GCGCCGTCAA TAACGTGCGG
GTTCCACTTC AGTGGGTGAA CGTCCCTGAC GTGGAGTGGC GGATCGCGCG GTTGACGCCG
GAAGCGGCCG CTCTGCTCAT ATCCAGTTAT GAGGATTGGG AGTCGTTCTC GCCATCGGTA
AGCGATTTGG TCTCCCAGGG AACACAACCA CTTGGCGGGG AACGGAACCG TGGGCGCGTC
GGCTTCGTGG AGGTTGGACC ACTCGCTCCG GGGGTCTATT ATCTGGAATT GCGCGCTTTT
GGCAATCTGG TCGATCGCCA GGTCATGGTG GTCAGCCCAT ATGCGCTGAC CGTCAAGCGC
AGCGCGGATC GCCTGTTCGT CTGGGCAGTC GATCTGGCAA CCGGGCAACC GGTTCCCGGT
CTGGAAGTGC GTGCCGCAAC ATACCGCTAT GATCGGGCCG CTTCTATCGA TACGCCGGTC
AACCTCGGGC GCACCGGCGC CGATGGCGTG CTGGTCGCGC CGTTTGATGG GCGGGGGTAT
GGGGCGATCT TTCTCTGGTC ATCAGAGAGT GGCAGGACGG TCACGTTCAC AACCAGCGAT
TGGGAGAGCG GTATCAGTCC CTGGAACTTC GGATTAATGG CAGACTACGG ATCGCGCACG
CTCGCCGGCA GCCTGTTGAC CGACAAGCCG ATCTATCGCC CAGGGCAGAC GGTACACGTG
CGCGGAGCGT TGCGCGGCAT TGCCGTTGGC ACGGGACAGG GTCAGGTAGA ACGGTATGTG
CTGCCCGGCG TCGGAGATCG CGCGTATGTG GAAGTGAATG ATCCTGAAGG GAGCGCCATC
TTTTCGACCA CGCTGACCTT CAGCCCGTTC GGCACGTTCA CGACCGACCT GCCGCTGGCG
CAGGGCGCGC CGCTCGGTTC GTATTCGATG GTCGCGCGGC TTGGCGGCCC GCAGGGATAC
CTCAGCGACG CACCGGTGGT ATTTGGAAGT TTTCTGGTGG CAGAGTATCG CGTGCCGGCG
TTTGAAGTAA CGCTCACGCC TTCGACGTCC GACCTGCTGC GCGGCGATCC GCTGAATGTC
GCCGTGCAGG CGGCGTACTT CGCCGGCGGC GCGCCATCCA ATGCGCCGGT GCGCTGGCGC
TTGCTGTCGC AGCCCTTCTA TTTCTCCAGC GACAATGCGC CGAATTTCAG TTTCTTCGAC
ACGGATGACG CCTATGCCTG GTACGCTTTT CGCCAGGATT TCATGTTCGG CGATCTGATT
GCCGATGGTG AAGGAACAAC CGATGCGCAG GGACGCTTCA CCCTGACCCT CCCGGCGTCG
GTGTATGATC GCCAGCCGAC GGGCAACGGT CTGCGCACCG GCAGCCAGGT GTTGATGCTC
GATGTCGAAG TGACCGATGT CGATGGGCAG GTGATCGCTT CGCAGGCGAC GGTCACCGTC
CATGGCGGCG CGTTCTACAT CGGTCTGCGC CCAGAAGGAT ATGTCGCGCG CGCCGGGCAG
CCACAACAGG TCTCGATTGT CACCCTGACG CCACAGGGCG ATCCGGCGCC GAATCGCGCC
GTCGATGTGG AGATATACCA GCGCGAATGG TACAGTGTGC GCGAGCAGGG CGCCGACGGA
CGGTTCTACT GGACATCCGC CTACACCGAC ACGCTTGTTG AAACGCGCAC GACGAGAACC
GATGCACAGG GGCGCGGGCA GGTGCAGTTC ACACCGATGA AGGGTGGACT ATACCGTCTT
GTTGGAAAAG GGAAAGACGA CGCCGGACGC ACCGTGCAAA CAGGCGCCTA TACATGGGCT
GAGGGCGGCA ACGTCTTCTG GGGGATCAAC GACAGCAACC GCGTCGATCT GATCGCCGAC
AAGCGCCTCT ACAAACCGGG CGATACGGCG ACCATTCTGG TAACCGCGCC CTATCCCGAT
ATGACCGCCC TGCTCACGAT TGAGCGCGGC AGCGTGATCG AATATCGCAC CTTCACGCTC
CAGGGAACCA CCGGTGTGCT CCAGGTGCCG ATCCGCGATG AGTATGCGCC AAATGTATAC
GCTGCGCTGA CCCTGATCAA AGCGGCAGGA GACGGCAGTA ATCCCGACGC GCCAGCCGCG
CCCGACCTGC GTGTCGGTAT CGTGAAACTG CCGGTCTCGA CCGAGCGCCA GGAATTGACG
ATTACCCTCA CACCCGACAA AACGCAGGTC GGTCCGCGCG ACACTGTGAC CTACATGCTC
AAGGCGACCG ACTACACCGG CAAGGGGGTG CGCGCCGAGG TGTCGCTGGC GCTGGTCGAT
AAGGCGGTGC TGACCCTGAC AAATGACCCC AACCCGTCGC TACGCCAGGC ATTCTACGAT
CAGCGCGCGC TGGGAGTGTT CACCTCCAGC CCGCTGACAG TGCTCGTGGA TCGGGTGACG
CTACGGTTGC AGCCAGGAGA CAAGGGAGGG GGCGGCGGTC TCGAAGCGCC GCTGGATGTG
CGACGCAATT TCCCGGACAC CGCGTTCTGG AACCCAGCGC TCGTCACTGC TGATGACGGT
ACGGCACAGT TCAGCGTGAC CCTCCCGGAC AACCTGACGA CCTGGCGTTT GACGGCGCGG
GCGATAACCG CCGACACCCT GGTTGGCGAA CAGACCGTTG ATATTGTCGC CAGCAAGCCG
CTGTTGCTCC GCCCAACGCT GCCGCGCGCT CTGACCGTCG GCGACCGTCC GGTGTTGCAG
GCAGTGGTGC AGAACACGAC CAATGCCGCC ATTGAAGCGA CGGTGCAGGT GACGCCGAAC
CCTGCATTGA CGGTTGAAGG ACCGTTGGAG CAGCGCGTGA ATGTTCCGGC GAATAGCACG
GCACTGGTGC GCTGGCAGGC AAGCGTCAAT CCGCCCCCCG GCGATGCCGA TGAAGCCATT
CTGACGTTAC GCGCAAGCGG CGGCGGTTAT GACGATGCGG TTGAGGCGCG TGTTCCACTA
CGCTTCCTGA CGACAGCGGA AGCGACCGCC AGCGCCGGGC AGGTGCTCGA TCAGGTGGTT
GAGACGGTCC AACTGCCGCC AGAAAAAGCG GCAGCCGATG CGCGCGTCGA ACTGGAGTTG
ACCCCGTCGC TGGTGGCGGG TATCACGCGG GGAGTCGAGC AATTAGCGCG GTCGCCATAC
CTCAGCAGCG AAGCGACGGT CAGCAGTTTC ATGCCGGCTG CCGCTGCCTA CCGTCTGCTC
CAACAGGCGG GATTCGACGA TCCGCAGTTG CGCGCAACAC TCGAACGCAG TCTGACAGTC
GGCGTGCAAC GTCTGTCCGT TCTCCAGAAG ATCGATGGCG GCTGGGGATG GTGGAACGCC
GACGAGAGCG ATCCCTATCT CACCGCCTAC GCCGTTCAGG GTCTGGTTGA AGCGCAGCGC
GCCGGTTTCA CCGTCGATCC GGCGATACTG GACCGCGCGA TGGTCTTCCT GACCGAAGCG
CTCGATGCTG CGCCATCACT GCGTTCGCCA TTGAGCGATC CGAATACCCG CGCGTATGTG
CTGTTCGTTC TTGGCGAGGC AGGCAAGCCG GATCGTGGGC GGGCGGTCAA TCTGTACAAC
GAGCGCAGCG CATTGAATGT CGCAGGGAAA GCGCACCTGC TGATGACCCT TCAGGCGGCC
GGCAGCGAGG AAAGCCGTAT CCGAACGCTG ATTGCCGAAC TGATGGGAAG CGCAGTGCTG
ACCACTTCCG ACGCCCACTG GGAAGTGGGT GGGATGTCAC TCTGGGCGCT CGACAGCGAC
GTAACCGCCA CCGGACTGGC TCTTCGCTCG CTTTTGCGCA CCGATCCGCA GAACTTCCTG
ATCCCCGGCG CGGCGCGCTG GCTGATGGGA GAACGTGAGC GCGACATCTG GCGCACGACC
TACGACTCTG CTGGAGCAGT GCTTGCGCTT GCCGAGTATG CGGCACAAAC CGGCGACTTG
CAAGCCGACT ACCGCTATCG TGTCGCACTC GACGGGCGCA CCATTCGTGA AGCAGTGGTT
TCACCGGCAA CCTTGCGCGA GACCGACCGG GTTACGATTG CCGGCGCCGA TCTGAAGCCT
GAAGGGAGTC AGGTGCTGTT GCAGCGGCAG GCAGCCGCCG ATCAGAGTGG CAAGGGGCGA
TTGTACTACA CGTTGCGTGT GCGCTACCGC GAAGACGCCG CCGGTGCGCA GGCGCTCGAC
CGGGGGTTCG GCGTGCAGCG CGAGTACATC GCCGTCGCCA GCGACACCCT TAGCCCAACG
GGACAGTTGA TCACCCAGGC GCGGCAGGGT GATCTCGTTC AGGTACGGAT CACCCTGAGC
ATTCCCACCG ATGTGCGCTA CCTGACGGTG GAAGACTTCC TGCCCGGCGG GTTGGAAGCA
CTCGACACCA GCCTGAAGAC GACGACGGCA GCAGTGCGTG ATGCGGAGTT GATGCCGGAG
GGCGAGGAGC AGCCATACTG GTGGCACTTC GGACACACCG AAGTGCGCGC CGGGCGGGTG
GCGCTCTTCG CCACCGATCT GCCAAAGGGA ACGTACACCT ACACCTATCT GGCGCGCGCG
ACCGTTCCCG GCATATACGC CGCGCCGCCG GCAACCGCAT ACCGCGCGTA TGCGCCGGAA
GAGTTCGGCA GAAGCGCGGG GGCGTCGTTT ACCGTCGTTG CGCCGTAG
|
|---|
| Protein sequence | MKQNPQFPLR AIIAAGIGVI LIIAAVLAGP LLLSAPQVVR IEPPDGAEMV NPQAPLRIEF
SQPVQKDSLA AVLRIEPSVD LTIDMEGNSA LVRPTGGLQY GAEYTLTVGA GVRNALGRAT
ESAQTVRFRT APYVTVREVF PADGSADVPL ETLIMVEFNA PVVSAEAIAA AADDPRRADE
LPQPLTLTAG SDPKPVNGVG RWLSPTRFGF SPEDGLRLAT TYRVTLRADL TPDGAARMEQ
PVNWSFTTAA QLLIGTRPFD GEIDVAADRP IEIRLHRDID PASVGASFRL LDAGGAAVAG
TVETFEGGVR FKPAAPLQRG VRYRAMLEPG VNTRTGAILN AKPFEWTFVV IGDLEVQQVE
PAGDTRDVPV DIKRISVRFN HPVVPVVDVA GSGGLPVAAT IEPPVQGVAR WIDTSTFVFS
PTVPLDSSTD YRVRVAAGLT DQTGGVLRNE YVWSFRTIDP AVNDVQPTSA YAAPTTPVTV
TFNQAMDLAS LRSALRVIRA DNGAQVAGTI AVSGTSAIFR SDAPLERGVD YRVVIDAGAR
SARGNGVLDQ PFSSSFRVAP LPALVMTDPA PGATFSPSAG GIRLIFSTPM DWDTVGRALV
IEPKLTDVFT SSYETDFYIY SQFEPETEYR ITVGAAARDL YGMALGQDAT VTFRTGPREP
FVGLIGAYRA GFYRAVNNVR VPLQWVNVPD VEWRIARLTP EAAALLISSY EDWESFSPSV
SDLVSQGTQP LGGERNRGRV GFVEVGPLAP GVYYLELRAF GNLVDRQVMV VSPYALTVKR
SADRLFVWAV DLATGQPVPG LEVRAATYRY DRAASIDTPV NLGRTGADGV LVAPFDGRGY
GAIFLWSSES GRTVTFTTSD WESGISPWNF GLMADYGSRT LAGSLLTDKP IYRPGQTVHV
RGALRGIAVG TGQGQVERYV LPGVGDRAYV EVNDPEGSAI FSTTLTFSPF GTFTTDLPLA
QGAPLGSYSM VARLGGPQGY LSDAPVVFGS FLVAEYRVPA FEVTLTPSTS DLLRGDPLNV
AVQAAYFAGG APSNAPVRWR LLSQPFYFSS DNAPNFSFFD TDDAYAWYAF RQDFMFGDLI
ADGEGTTDAQ GRFTLTLPAS VYDRQPTGNG LRTGSQVLML DVEVTDVDGQ VIASQATVTV
HGGAFYIGLR PEGYVARAGQ PQQVSIVTLT PQGDPAPNRA VDVEIYQREW YSVREQGADG
RFYWTSAYTD TLVETRTTRT DAQGRGQVQF TPMKGGLYRL VGKGKDDAGR TVQTGAYTWA
EGGNVFWGIN DSNRVDLIAD KRLYKPGDTA TILVTAPYPD MTALLTIERG SVIEYRTFTL
QGTTGVLQVP IRDEYAPNVY AALTLIKAAG DGSNPDAPAA PDLRVGIVKL PVSTERQELT
ITLTPDKTQV GPRDTVTYML KATDYTGKGV RAEVSLALVD KAVLTLTNDP NPSLRQAFYD
QRALGVFTSS PLTVLVDRVT LRLQPGDKGG GGGLEAPLDV RRNFPDTAFW NPALVTADDG
TAQFSVTLPD NLTTWRLTAR AITADTLVGE QTVDIVASKP LLLRPTLPRA LTVGDRPVLQ
AVVQNTTNAA IEATVQVTPN PALTVEGPLE QRVNVPANST ALVRWQASVN PPPGDADEAI
LTLRASGGGY DDAVEARVPL RFLTTAEATA SAGQVLDQVV ETVQLPPEKA AADARVELEL
TPSLVAGITR GVEQLARSPY LSSEATVSSF MPAAAAYRLL QQAGFDDPQL RATLERSLTV
GVQRLSVLQK IDGGWGWWNA DESDPYLTAY AVQGLVEAQR AGFTVDPAIL DRAMVFLTEA
LDAAPSLRSP LSDPNTRAYV LFVLGEAGKP DRGRAVNLYN ERSALNVAGK AHLLMTLQAA
GSEESRIRTL IAELMGSAVL TTSDAHWEVG GMSLWALDSD VTATGLALRS LLRTDPQNFL
IPGAARWLMG ERERDIWRTT YDSAGAVLAL AEYAAQTGDL QADYRYRVAL DGRTIREAVV
SPATLRETDR VTIAGADLKP EGSQVLLQRQ AAADQSGKGR LYYTLRVRYR EDAAGAQALD
RGFGVQREYI AVASDTLSPT GQLITQARQG DLVQVRITLS IPTDVRYLTV EDFLPGGLEA
LDTSLKTTTA AVRDAELMPE GEEQPYWWHF GHTEVRAGRV ALFATDLPKG TYTYTYLARA
TVPGIYAAPP ATAYRAYAPE EFGRSAGASF TVVAP
|
|---|
| |