Gene Rcas_2562 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2562 
Symbol 
ID5540044 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp3303283 
End bp3303966 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content65% 
IMG OID640894691 
Productmethyltransferase type 11 
Protein accessionYP_001432658 
Protein GI156742529 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG2226] Methylase involved in ubiquinone/menaquinone biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000154268 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGCCA GCGCGCCTGC TGCGCTCTAT GCGCGCCTGA TACGGTGGGC GTTTGCGCGC 
TTCTACCAGG AGTTTGCCTG GACGTATGAC ACCGTAGCGG CGCTGGCGTC GGCAGGTCGG
TGGCGCAACT GGACGTTGAC GGCGCTGGAG TTTGCACGCG GCGCAACGCT GGAGGTTGGC
TGTGGCACCG GGCATGTCCA GCTGGCGCTG GCGCGGCGTC ACGTCGGGTT CTTCGCCGGG
CTGGATCGGT CGCCACAGAT GCTTCGGCTG ACCCGTCGCC GTCTGAAACA AGCCGGGTTC
CGCGCTCCGC TCGTGCGCGC CGATGCACGC GCCCTTCCTT TCGTCTCCGA ATCATTTGAC
GCGATTATTG CGACCTTTCC AAGCGACTAT ATCGCTGCTG AAGCGACTGT CGCCGAAATC
CGGCGCGTGT TGCGCCCTGG AGGAACCGTT GCGATTGCGC TGTGGGCGCG CTTTGCTGAT
GATTCGCCCT ACGCGCGCCT GCTTGATGTC GCGTACCGCG CGACGCTCCA GCGGTCGCCG
CGTCCGGTGA CGTCTGTAAC CTCTGCCGCC CTGCACCGCT TTGGCGAACG GTTCGAGCGC
GCCGGCATAG ACGTATCGTT CAGAGAAGTC GCAACGCCGG ATGGCGCAGT GCAGTATGTT
CTGGGAAAGC GCCGGATGTT ATGA
 
Protein sequence
MAASAPAALY ARLIRWAFAR FYQEFAWTYD TVAALASAGR WRNWTLTALE FARGATLEVG 
CGTGHVQLAL ARRHVGFFAG LDRSPQMLRL TRRRLKQAGF RAPLVRADAR ALPFVSESFD
AIIATFPSDY IAAEATVAEI RRVLRPGGTV AIALWARFAD DSPYARLLDV AYRATLQRSP
RPVTSVTSAA LHRFGERFER AGIDVSFREV ATPDGAVQYV LGKRRML