| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2543 |
|---|
| Symbol | |
|---|
| ID | 5540025 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 3282665 |
|---|
| End bp | 3283741 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640894673 |
|---|
| Product | parB-like partition protein |
|---|
| Protein accession | YP_001432640 |
|---|
| Protein GI | 156742511 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1475] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | [TIGR00180] ParB-like partition proteins |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.484579 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0207882 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCTTC TCTGGATCGA TCCGCGGGCG CTCGAACCGG ATCCGCAGGG CGTCCGCGAA
GACCCCGGCG AAATCGATGG ACTTGCGACG ACCATCGCTG AGTATGGGTT GCTTCAGCCG
CTCGGCGTGA TCGACATCGG GCGCAGTCGC TATCGTGTGG TGTACGGCAA CCGTCGGCGG
TTGGCGGCGC TGAAACTGGG GTTGGAACGG GTGCCATGCG TGCTGCTCGA TCCCGACGAT
CCGCGGGTGT TCCTGCGCCA GTTGACCGAA AATCTGCAAC GGCGCGACCT GAACGACCTC
GAGCAGGCGC GCGCCTTCCA GAAATTGCGC GAGCAGATTG CGCTCGAGCG CGGCAGCACC
GACGAAGGGG CGCTCGACGA GGCGGCGGCT CGCCTCGTTG GGCTGTCGCC GCGCACGGTG
CGGCGCTACC TGGGGTTGCT CGACCTGCCG CTCGAAATCC AGGAGTATCT GCGCAAAGGC
GATCTGAACG TCACGCAGGC GCAGCACCTG CGGCGTGTCA CGAACGAACG CACGCAGATC
GAACTGGCGC GCGCCGCTGT CGAAGAGGGT ATGTCAGCCG CCGAGATCAG CCGCCTGGCA
AGCTTTTTCG CCGCCAACCC CAATCTCTCG CTCGACGATG CGCTTCAGGC GTTGCAACAG
GGCGTCGATC TGGCGGCGAC GATGCCACGC AGCGCAAGCA GTGCCGCCAT GCCTGCCGCC
GGTCCGCTCC TCAAAGGCGC TGCGCTCGGT GATCTGTCCG ACGACGAGCG CGACGCCGGT
TTGTGGGACG ACGAAACCGT AGACGATGAT CCTGTGTTCC CCGACATCGC CGACGAAACG
ATTGAGAATC AGCCAAAGAA CAAAGCGCGC GTCTTCCGCA TTCGTTCGCT CGACCAGATG
ATCGATGAGA CCGACCGGCT GTTTCGGGCG CACGCCGAAG GCGATCTGAT CAAATGGGTG
CGCCAGGACC AGCACGCGCC GATGAAGATC GGGTTGTTGC TCAAGCAACT CGATGCACTG
TCGCGCGCGT TGCGCGAGAT TGCGCGCCAG CAGAATTGGG TCTTTGAGGA TGCATGA
|
|---|
| Protein sequence | MQLLWIDPRA LEPDPQGVRE DPGEIDGLAT TIAEYGLLQP LGVIDIGRSR YRVVYGNRRR
LAALKLGLER VPCVLLDPDD PRVFLRQLTE NLQRRDLNDL EQARAFQKLR EQIALERGST
DEGALDEAAA RLVGLSPRTV RRYLGLLDLP LEIQEYLRKG DLNVTQAQHL RRVTNERTQI
ELARAAVEEG MSAAEISRLA SFFAANPNLS LDDALQALQQ GVDLAATMPR SASSAAMPAA
GPLLKGAALG DLSDDERDAG LWDDETVDDD PVFPDIADET IENQPKNKAR VFRIRSLDQM
IDETDRLFRA HAEGDLIKWV RQDQHAPMKI GLLLKQLDAL SRALREIARQ QNWVFEDA
|
|---|
| |