Gene Rcas_2540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2540 
Symbol 
ID5540022 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp3279012 
End bp3280838 
Gene Length1827 bp 
Protein Length608 aa 
Translation table11 
GC content66% 
IMG OID640894670 
Productmagnesium chelatase ATPase subunit D 
Protein accessionYP_001432637 
Protein GI156742508 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1239] Mg-chelatase subunit ChlI 
TIGRFAM ID[TIGR02031] magnesium chelatase ATPase subunit D 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0127651 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGCGC TTCCACTCCC TGCACTCGTT GGTCTGGAAC TGGCACAGCA GGCATTGCTC 
CTGCTGGCGG TCGAGCCGCG TCTGCGCGGG ATTGCCGTCG GCGCGCCGGC CGGCGCGGGG
AAGAGCAGCC TGGCACGCGG CATGCGCGAC TTGTTGTGTT CCGGCGATCA ATCGGTTCCG
TTTGTGGAAT TGCCGCTTGG TGTGGACGAA GCCGGTCTGC TGGGCGGACT CGACATCGAG
GCGACCCTGC GCGCCGGAAG GCGTGTGGCG CGCGCGGGGG CGCTGGCGCG CGCCGATGGC
GGCATTCTCT ATGCCGATCA GGTCAATCTG CTGCCCGATG CGATCATCAA TCCACTGATC
GCTGCCATTG ATACCGGGGA AGTGCGTCTC GAGCGCGAAG GTCTCAGCGT TCAATCACCG
GCGCGTTTCG TCTTTATCGG TTCTTACGAC CCGGCTGAAG GGCTGCCGCG CCGCCATCTG
CTCGACCGAT TGGGTTTGCT GCTGGTGTTG CCGCGTGCGA TGAACGAGCA GGCGCGCACC
GAGGTGGTGC GGCGCAATCT AGGGCAGGCA ACGCAAACGT TGTCGGATGC CTATGTGGAT
GAACTCGATC TGCTGCGCGG GCTGGTGCAG GCGGCGCGTG AACAGTTGCC GCAGGTGCGG
ATCGATGACG AACAGGTTGA ACAGTTGGTG GCGATGGCGG CGCTCTGCGG CGTTGAGGGT
CACCGTGCCG ATACATTCGC GGTCTATGCT GCATGTGCAG CAGCGGCGAT AGGTCTGCGC
GATCATGTTG AGCAGGAAGA CCTGGAACTG GCAGTGCGGT TGGTCATTCT GCCACGCGCG
ACGCGCCTCC CGCCGCCGCC GGAACCGCCT TCTGATGATG AACCGCCTCC GCCGCCGTCC
GACGCCGACA ACAACACATC CGACGCGCCG CCTGAGCCGC CGTCGGACGA TGAGTTGACC
ATCCCGCCCG AACAGGTGCT CAGCGCGCTG GCTGCCGAAC TGCCGGTCGA GCTGGAACAA
CTGCCGTTTC GCACGCTGCG CCGTGGGAAG ACCGGATCGC GCGGCACGGT GGCGGGAAAG
CGAGGGCGGC ACATTCGCAG CATCCCCGGT GATCCGCGCC GCGGACGGAT CGATGTATCC
GCCACGCTGC GGGCGGCGGC GCCGTTCCAA CCGTTGCGCC GCGCTCAGGC GAATGCGCAT
GCTGCACCGT CCAGGGTATT GCTGCGCAGC GATGATCTGC GCATCAAGCA GTACCGCAGC
AAGGCGGGAG CGCTCTTCCT CTTTGCAGTA GATGCAAGTG GCAGCATGGC GCTGCACCGC
ATGCGTCAGG CGAAAGGCGC AGTGCAAGCG CTTCTTCAGA AAGCGTATGT TCACCGTGAC
CGCGTGGCGC TGCTGGCGTT TCGCGGGCAA AACGCCGAAC TGCTTTTGCC GCCGTCGCAG
AGTGTCGAAC TTGCGCGCCG CGCCCTCGAT CTCTTGCCGA CCGGCGGCGG CACGCCACTG
GCGGCGGCGC TTCTGGCAGC CATCGAAGTA GCGCAGCAGG CGCGCGCGCG CGGCATTATG
CAGACGGTGC TGGTGTTGCT GACCGACGGG CGGGCGAATA TCGGGTTGCG TGCCGGGCGC
GAAGGGGTTG CTGACGAACT GCAAACCATC GGGCGCGCAG TGGTGGCGGC TGGCATTCAA
ACGATCGTCG TTGACACCCA GCGCACCTAC CTGAGCCGTG GCGAAGCGCG CAAACTGGCA
GAATGGCTTG CCGGGGAGTA TGTCTACCTC CCCAATGCCC AGGGCGAACA GATCGCTGCG
CTGGCGGTCG ATCGCGTGGA GCGATAA
 
Protein sequence
MSALPLPALV GLELAQQALL LLAVEPRLRG IAVGAPAGAG KSSLARGMRD LLCSGDQSVP 
FVELPLGVDE AGLLGGLDIE ATLRAGRRVA RAGALARADG GILYADQVNL LPDAIINPLI
AAIDTGEVRL EREGLSVQSP ARFVFIGSYD PAEGLPRRHL LDRLGLLLVL PRAMNEQART
EVVRRNLGQA TQTLSDAYVD ELDLLRGLVQ AAREQLPQVR IDDEQVEQLV AMAALCGVEG
HRADTFAVYA ACAAAAIGLR DHVEQEDLEL AVRLVILPRA TRLPPPPEPP SDDEPPPPPS
DADNNTSDAP PEPPSDDELT IPPEQVLSAL AAELPVELEQ LPFRTLRRGK TGSRGTVAGK
RGRHIRSIPG DPRRGRIDVS ATLRAAAPFQ PLRRAQANAH AAPSRVLLRS DDLRIKQYRS
KAGALFLFAV DASGSMALHR MRQAKGAVQA LLQKAYVHRD RVALLAFRGQ NAELLLPPSQ
SVELARRALD LLPTGGGTPL AAALLAAIEV AQQARARGIM QTVLVLLTDG RANIGLRAGR
EGVADELQTI GRAVVAAGIQ TIVVDTQRTY LSRGEARKLA EWLAGEYVYL PNAQGEQIAA
LAVDRVER