Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2535 |
Symbol | |
ID | 5540017 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 3269858 |
End bp | 3271333 |
Gene Length | 1476 bp |
Protein Length | 491 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640894665 |
Product | zeta-phytoene desaturase |
Protein accession | YP_001432632 |
Protein GI | 156742503 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
TIGRFAM ID | [TIGR02734] phytoene desaturase |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00482984 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.000000000435247 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGAATCTTC CGATCATTAT CGTCGGCGGC GGGCTTGGCG GTTTATCCGC CGCCATTCAT CTGGCGGCGC GCGGGCAGCG CGTTGTGCTG CTCGAAAAGA ATGAGCGCGT CGGTGGTAAA CTGAACCTGG TCGAAGCCGG TGGCTTCCGG TTCGACACCG GACCTTCGCT TCTCACCATG CCCTGGGTGC TGCGCTCGGT CTTTGCTGCC GCAGGGCGAC GAATGGAGGA CTTTCTGACC ATTACGCAAC TCGAACCGAT CTGCCGGTAT CGCTGGCTCG ACGGTACACG GTTCGACGCC TATCAGAACC TGCCCCGTCT CGCCGAGGAG ATTGCGCGCA TCGAGCCGGC CGATGTTGCA GGCTTTCTTC GTTTCCTTGC CTATGCCGAA CGCATCTATC GCGCTGCGGA AGGTCCGTTT TTGCTGCGAC CATTCGATGG TGTGCGCGAT CTGCTCACGC CCGAACTGTT CAGCGGCGCC TGGCAGATCG ACCCGTTTCG CACCGTTGAT CAGGCAGTCC GCAGTTTTTT CCGCAGCCCG TACCTGCGCC AGGTGTTCAA CCGCTATGCG TCGTACAACG GCTCGTCACC CTTTCGGGCG CCGGCAACGT TCAATCTCAT TCCTTATGTC GAGTTTGTAC AGGGCGCATG GCACGTCTGT GGCGGAATGT ATCAGATCGC GCGCGCGCTT TCGGCGCTGG CAGGCGATCT TGGCGTGGAG ATTCGCACGA ATGCGCCGGT CGAACGCATC GAGGTCAGTC ATGGCGCCGC CTGTGGTGTC GTTCTGGCTG GCGGCGAGCG ATTGGCTGCG TCGCAGGTCA TCGTCAACGC CGATCCGCGC CACGCCTATG CAACCCTGAT CCCTGGCACA GAAAAGACCG CAGCGCGCCT GGCGCGACTC GAATCATCGT ACAGCGGGTT TGTGCTGCTG CTGGGGATCA ATCGCATCTA CTCCAACCTG GCGCATCACA ATATTTTCTT CTCGTCCGAC TACCGCGCCG AGTTCAGGGC AATCGTCGAT ATGCAGACGC CGGCGCCCGA CCCGACGATC TACATCTGTG CTGCATCCGT GACCGACCCT GCAATGGCGC CGCCGGGACA CATGAATCTG TTCGTTCTGA TCAATGCGCC GACGCTCAAC CCGCGGGTCA ACTGGGCGCG TGAAGCGCCC GGTTACCGCA ATCTGGTTCT GCATAAACTG GAACACATGG GACTGGAGAA CCTGAGTCAG CATATCGTCT TCGAGCAAAT CTGGACGCCT GCCACCATCA ATGAACGGTA CAACGCCCCT GGCGGCGCGA TCTATGGATT GGCGTCGAAC AATCCATGGA CGGCATTCAT GCGTCCGCCG TTGCGCGCCC GCGAGGTGCG CGGCGTCTAC TTTGTCGGCG GCGGCACGCA TCCCGGTGGC GGCATTCCGC TCGTGCTTCT CTCAGGGCGC GCCGTTGCCG GGCGCGTTCT GGCAGACATC GCCTGA
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Protein sequence | MNLPIIIVGG GLGGLSAAIH LAARGQRVVL LEKNERVGGK LNLVEAGGFR FDTGPSLLTM PWVLRSVFAA AGRRMEDFLT ITQLEPICRY RWLDGTRFDA YQNLPRLAEE IARIEPADVA GFLRFLAYAE RIYRAAEGPF LLRPFDGVRD LLTPELFSGA WQIDPFRTVD QAVRSFFRSP YLRQVFNRYA SYNGSSPFRA PATFNLIPYV EFVQGAWHVC GGMYQIARAL SALAGDLGVE IRTNAPVERI EVSHGAACGV VLAGGERLAA SQVIVNADPR HAYATLIPGT EKTAARLARL ESSYSGFVLL LGINRIYSNL AHHNIFFSSD YRAEFRAIVD MQTPAPDPTI YICAASVTDP AMAPPGHMNL FVLINAPTLN PRVNWAREAP GYRNLVLHKL EHMGLENLSQ HIVFEQIWTP ATINERYNAP GGAIYGLASN NPWTAFMRPP LRAREVRGVY FVGGGTHPGG GIPLVLLSGR AVAGRVLADI A
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