Gene Rcas_2496 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2496 
Symbol 
ID5539977 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp3217665 
End bp3218819 
Gene Length1155 bp 
Protein Length384 aa 
Translation table11 
GC content59% 
IMG OID640894626 
Producthypothetical protein 
Protein accessionYP_001432594 
Protein GI156742465 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAACAT CCATCCCCCT CTTTACCGTC ACCCTCGGAA CCGATGCAGA ACTAGCGTCG 
AAGATCGCTG CCGGATTACA GTCCGGCGCT TACGAACTGA TCGGCGGCGT GGTGCGTGAC
ACAGGCAGCA AGCAGATCGT CGCCTGGCTG CGTCAGGTTG GTCATATCGC TCCTGCTGCG
CTGCCGACTT CCGTGATGGG ACCGCTCGCA TTCCAGGCAC TGATCGCATC AACATCACTT
CTGACCCTCG GCGTGACCGT TATCGGATTC GCGCTCATGA GGAAGCGCCT GGATACGATT
GCGAAAGACA TCGCTTCGAT CAAGCAAACA CTGGAACGGA TGGAGCGAAA ACTGGACCTG
TCTCTTGACG CAAAAGTCCG CACCGCGCTC GATCTGGCGC GCAGAGCGTT TGAGATGCAC
GATCCGGTCA ACCGGCGAGA TCACGCGCAT CAGGCGGCAA CCATGTTTCT TGAGGCTGAA
CACTACTATC GCAGCTTGCT GGACGCCGAA TACGGAGAAG GGGGATGGCT GATCGCCCCG
TTGCTCAAAA CATTGACCCT GGCGCGTGTT GGCGCGGCGC GCTGTTACCT TGGGCTGGGC
GAAACGGCGG CAGCGCGGAG TCTGCTCAGT GAAGGATACA TCGTGCTCGA ACCGTATGTT
CAGCGGTGGT TCGATGCCGT CGTCGGCGTC CGACCGGCGC TCGTTCTCCA TCCAGCGACC
GGCATTTCGC TTGAACGGTT GACACTGCTG ATGCGCTATC GCCAACATGA CCCGGCGCTC
AGCGGGACGG CTGTGTTTGA ACAACTGCGC GCCGAGCTGT GGAAAAGCGC CGTACAGGAC
ATCAATCAAT GGCGACAACC CTTCCCGCCC GTGTTACGGG AAGACCCGGA AGTGACGCCT
CTCGACTGGG CGCTTCATCG TGAAAAGATT ACTACCCGCT TCCTGGCGCG CCTGGCAGAC
ACATGCACGC AGATTGAAAC GGTCTATGCC GCAGTGCGCT GCATCGAGGG CTACCGGCTC
GAACTCGAAC AGATCGAGCG TATGGGGCTA TCACCGGACG AACTCGATCA GCAGTGCGCG
CTCCTGTCGT CGGACAGCGC GTTGATCGTG CATGTTCCGA AGGGCTCAGA ACTCGCCAGA
CACGTGATCG TCTGA
 
Protein sequence
MTTSIPLFTV TLGTDAELAS KIAAGLQSGA YELIGGVVRD TGSKQIVAWL RQVGHIAPAA 
LPTSVMGPLA FQALIASTSL LTLGVTVIGF ALMRKRLDTI AKDIASIKQT LERMERKLDL
SLDAKVRTAL DLARRAFEMH DPVNRRDHAH QAATMFLEAE HYYRSLLDAE YGEGGWLIAP
LLKTLTLARV GAARCYLGLG ETAAARSLLS EGYIVLEPYV QRWFDAVVGV RPALVLHPAT
GISLERLTLL MRYRQHDPAL SGTAVFEQLR AELWKSAVQD INQWRQPFPP VLREDPEVTP
LDWALHREKI TTRFLARLAD TCTQIETVYA AVRCIEGYRL ELEQIERMGL SPDELDQQCA
LLSSDSALIV HVPKGSELAR HVIV