Gene Rcas_2470 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2470 
Symbol 
ID5539951 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp3173335 
End bp3175605 
Gene Length2271 bp 
Protein Length756 aa 
Translation table11 
GC content57% 
IMG OID640894600 
Productdiguanylate cyclase with GAF sensor 
Protein accessionYP_001432568 
Protein GI156742439 
COG category[T] Signal transduction mechanisms 
COG ID[COG1956] GAF domain-containing protein
[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.578353 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATATTG AATCGCTCCG TGCAGAGAAT GAGGCGCTCA AGGCTCGCAT CAGCGATCTC 
GAACGCGCCT TGCAGCACGC ACAGGACGAA AGTCGTTCCC CTCTCTTTTC CGCTGCTCCC
GATTGCTTCA CGGCGCTTCA TGAGACGGCA TTGACAATCA TGAGGCATCT CGATCTGAAT
GACGTTCTTG AGGCAATCGT GCTGCACGCG ACGCGGCTGG CAGGCACAAG CGACGGGTAC
ATCGATCTCC TATCGCCTGA TGGAACGCAG ATGGAGATGA AGATCGGAGT CGGCTGGTAT
GCCGAACATT GTCGTGAACC GATCGATATC GGTGACGGCA TCGGCGGCAG AGTCTGGCAA
ACCGGCAAAC CAATGATCGT CCGGGATTAC CGCACCTGGG AAGGGCGCGT TCCCTTTCTG
GACTCTTCGA GCATAGGAAC CATCGTTGCC GTGCCACTTC GGTCGGGATC GACCGTCATC
GGAGTATTGG GCATCTCGTA CTTCGAGTCG GATCGTCCGG TTGCCGACGC GCTTGTGGAT
ATGCTGCTGC GTTTTGCCGA TCTGGCAGCG ATTGCGATTG GCAATGCGCG TCTCTACACC
ATCGTGCAGA ACGAACTGGC GGAACGACGC CGGATCGAAG CCGAACTGCG CGAGAACGAG
CAACAACTGC GGCGTCTCTA TGCCATTACG AGGCGTCAGG CGCAGGAATT GCACCTGATC
GGTCAGGTGC GCGAAGCCAT CGCGCGCGAA ATCGATCTTC CGGCGCTGTT TCGCGTCGTT
GTCGAATCGA TCAATGCAAC CTTCGGGTAT ACGCTGGTTT GCATCTATCT CCGTGATGGC
GACAACTTGA TCCTCCAGCA TCAGGTGGGC TATCCTTCGC CCATTAATCG TATTCCGCTC
GATAAGGGCG TGATTAGCCG CACAATCCTC AGCGGACGAC CGACGTTGAT CACCGATGTG
CGCAGTGACC CCAATTTCAT CGGTGTGATG GATAATATCA CGTCCGAAAT CTGCGTCCCG
CTGTGCGATC AGGAGCGCGT CATCGGCGCA CTCAATATCG AGAGCGTTGA TGGCGTCGTG
CTGACCGAAG ACGACCTGCG TCTGATAACC GAGCTGACCG GGCACATTAA TGTTGCCATC
GAGCGCGCTC GACTCTATGA ACAACTATGG CGGCGCGTGC AGCAACTCGA CGCGCTCTAC
GACATCATGA CCGATATGAT TGGCAACCTG GACCTCGACG CAGTGTTGCA AACCATCGTC
ACACGGATGA TTGCGCTATT GCGCGCAACA CACGGCATGA TTGCCCTGTA TGATCCAGAG
CAACGCAATT TGCGCATCCA CTACAGCACC GGCATGGATC ACAATTACGC AAACAAGCGC
CTGGCTCTCG GCGAAGGTTT GATCGGCAAA GTGGCGCTAA CGCGCCAGCC GCTGGTGGTG
TACAACTACG AACACTGGGA GGGACAGTCG CCGGTGTTTC GTTCGATGCC ATCATCGAAT
GTGCTGGCGG CGCCGCTGCT GGCGGGTGAC GAATTGATTG GAACATTGAG CGTGGGTGAT
GTCAGTCTTG CGCGCGTGTT TACCAATGAT GATATTCGCC TGCTCAGCAT GTTCGCGCAG
CAAGCGACGA TTGCCATCAA GAATGCGCGA TTGTTTGCCG AAGTGCAGCA TCTGGCAATC
ACCGATCCTT TGATGGGCAT CTACAACCGG CGCTACTTCT TCAGCGCAGC AGCGCGTGAG
TTCGAGCGTG CGCGGCGTCA TCGCCACACA CTGGCAATTC TGATCGCCGA CCTCGATAAC
TTCAAACAGA TCAATGATCA TTACGGTCAT CCCATCGGCG ATCAGGTGTT GCAGGCAGTC
AGCAACACTT TTCGTCGTGA GCTGCGCTCG ATCGATCTGC TTGCGCGCTA TGGCGGCGAA
GAAATCATTG TGTTGCTGCC CGAAACCGAT TGCAGCGGCG TTATCCGGGT CGTTGAACGC
TTGCGGTCGC GTCTGCTGGA AGCGATTGCA ACCGAACGCG GCGCGATCCA CATCACTGCC
AGTTTTGGCG CGGCAGTGAG TCAACGCATC AACGCGCCGG ATGTCGAAAC GCTCATTGGT
TCCGCCGATC GGGCGCTGCT GCGCGCCAAG CAGCAGGGCA AAGATCGCCT CGTGATCTGG
TGCGACGCAT GCGCCGCCAA TGGCGTGTGC CTTCTCGCTC CGCCAGAAGC GTGTGATCGC
CGCATAACGG TTGTTTCCTC CACGAATACG TCCCCGGAGA AGACGGCGTA A
 
Protein sequence
MDIESLRAEN EALKARISDL ERALQHAQDE SRSPLFSAAP DCFTALHETA LTIMRHLDLN 
DVLEAIVLHA TRLAGTSDGY IDLLSPDGTQ MEMKIGVGWY AEHCREPIDI GDGIGGRVWQ
TGKPMIVRDY RTWEGRVPFL DSSSIGTIVA VPLRSGSTVI GVLGISYFES DRPVADALVD
MLLRFADLAA IAIGNARLYT IVQNELAERR RIEAELRENE QQLRRLYAIT RRQAQELHLI
GQVREAIARE IDLPALFRVV VESINATFGY TLVCIYLRDG DNLILQHQVG YPSPINRIPL
DKGVISRTIL SGRPTLITDV RSDPNFIGVM DNITSEICVP LCDQERVIGA LNIESVDGVV
LTEDDLRLIT ELTGHINVAI ERARLYEQLW RRVQQLDALY DIMTDMIGNL DLDAVLQTIV
TRMIALLRAT HGMIALYDPE QRNLRIHYST GMDHNYANKR LALGEGLIGK VALTRQPLVV
YNYEHWEGQS PVFRSMPSSN VLAAPLLAGD ELIGTLSVGD VSLARVFTND DIRLLSMFAQ
QATIAIKNAR LFAEVQHLAI TDPLMGIYNR RYFFSAAARE FERARRHRHT LAILIADLDN
FKQINDHYGH PIGDQVLQAV SNTFRRELRS IDLLARYGGE EIIVLLPETD CSGVIRVVER
LRSRLLEAIA TERGAIHITA SFGAAVSQRI NAPDVETLIG SADRALLRAK QQGKDRLVIW
CDACAANGVC LLAPPEACDR RITVVSSTNT SPEKTA