| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2470 |
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| Symbol | |
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| ID | 5539951 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 3173335 |
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| End bp | 3175605 |
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| Gene Length | 2271 bp |
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| Protein Length | 756 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640894600 |
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| Product | diguanylate cyclase with GAF sensor |
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| Protein accession | YP_001432568 |
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| Protein GI | 156742439 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG1956] GAF domain-containing protein
[COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.578353 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATTG AATCGCTCCG TGCAGAGAAT GAGGCGCTCA AGGCTCGCAT CAGCGATCTC
GAACGCGCCT TGCAGCACGC ACAGGACGAA AGTCGTTCCC CTCTCTTTTC CGCTGCTCCC
GATTGCTTCA CGGCGCTTCA TGAGACGGCA TTGACAATCA TGAGGCATCT CGATCTGAAT
GACGTTCTTG AGGCAATCGT GCTGCACGCG ACGCGGCTGG CAGGCACAAG CGACGGGTAC
ATCGATCTCC TATCGCCTGA TGGAACGCAG ATGGAGATGA AGATCGGAGT CGGCTGGTAT
GCCGAACATT GTCGTGAACC GATCGATATC GGTGACGGCA TCGGCGGCAG AGTCTGGCAA
ACCGGCAAAC CAATGATCGT CCGGGATTAC CGCACCTGGG AAGGGCGCGT TCCCTTTCTG
GACTCTTCGA GCATAGGAAC CATCGTTGCC GTGCCACTTC GGTCGGGATC GACCGTCATC
GGAGTATTGG GCATCTCGTA CTTCGAGTCG GATCGTCCGG TTGCCGACGC GCTTGTGGAT
ATGCTGCTGC GTTTTGCCGA TCTGGCAGCG ATTGCGATTG GCAATGCGCG TCTCTACACC
ATCGTGCAGA ACGAACTGGC GGAACGACGC CGGATCGAAG CCGAACTGCG CGAGAACGAG
CAACAACTGC GGCGTCTCTA TGCCATTACG AGGCGTCAGG CGCAGGAATT GCACCTGATC
GGTCAGGTGC GCGAAGCCAT CGCGCGCGAA ATCGATCTTC CGGCGCTGTT TCGCGTCGTT
GTCGAATCGA TCAATGCAAC CTTCGGGTAT ACGCTGGTTT GCATCTATCT CCGTGATGGC
GACAACTTGA TCCTCCAGCA TCAGGTGGGC TATCCTTCGC CCATTAATCG TATTCCGCTC
GATAAGGGCG TGATTAGCCG CACAATCCTC AGCGGACGAC CGACGTTGAT CACCGATGTG
CGCAGTGACC CCAATTTCAT CGGTGTGATG GATAATATCA CGTCCGAAAT CTGCGTCCCG
CTGTGCGATC AGGAGCGCGT CATCGGCGCA CTCAATATCG AGAGCGTTGA TGGCGTCGTG
CTGACCGAAG ACGACCTGCG TCTGATAACC GAGCTGACCG GGCACATTAA TGTTGCCATC
GAGCGCGCTC GACTCTATGA ACAACTATGG CGGCGCGTGC AGCAACTCGA CGCGCTCTAC
GACATCATGA CCGATATGAT TGGCAACCTG GACCTCGACG CAGTGTTGCA AACCATCGTC
ACACGGATGA TTGCGCTATT GCGCGCAACA CACGGCATGA TTGCCCTGTA TGATCCAGAG
CAACGCAATT TGCGCATCCA CTACAGCACC GGCATGGATC ACAATTACGC AAACAAGCGC
CTGGCTCTCG GCGAAGGTTT GATCGGCAAA GTGGCGCTAA CGCGCCAGCC GCTGGTGGTG
TACAACTACG AACACTGGGA GGGACAGTCG CCGGTGTTTC GTTCGATGCC ATCATCGAAT
GTGCTGGCGG CGCCGCTGCT GGCGGGTGAC GAATTGATTG GAACATTGAG CGTGGGTGAT
GTCAGTCTTG CGCGCGTGTT TACCAATGAT GATATTCGCC TGCTCAGCAT GTTCGCGCAG
CAAGCGACGA TTGCCATCAA GAATGCGCGA TTGTTTGCCG AAGTGCAGCA TCTGGCAATC
ACCGATCCTT TGATGGGCAT CTACAACCGG CGCTACTTCT TCAGCGCAGC AGCGCGTGAG
TTCGAGCGTG CGCGGCGTCA TCGCCACACA CTGGCAATTC TGATCGCCGA CCTCGATAAC
TTCAAACAGA TCAATGATCA TTACGGTCAT CCCATCGGCG ATCAGGTGTT GCAGGCAGTC
AGCAACACTT TTCGTCGTGA GCTGCGCTCG ATCGATCTGC TTGCGCGCTA TGGCGGCGAA
GAAATCATTG TGTTGCTGCC CGAAACCGAT TGCAGCGGCG TTATCCGGGT CGTTGAACGC
TTGCGGTCGC GTCTGCTGGA AGCGATTGCA ACCGAACGCG GCGCGATCCA CATCACTGCC
AGTTTTGGCG CGGCAGTGAG TCAACGCATC AACGCGCCGG ATGTCGAAAC GCTCATTGGT
TCCGCCGATC GGGCGCTGCT GCGCGCCAAG CAGCAGGGCA AAGATCGCCT CGTGATCTGG
TGCGACGCAT GCGCCGCCAA TGGCGTGTGC CTTCTCGCTC CGCCAGAAGC GTGTGATCGC
CGCATAACGG TTGTTTCCTC CACGAATACG TCCCCGGAGA AGACGGCGTA A
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| Protein sequence | MDIESLRAEN EALKARISDL ERALQHAQDE SRSPLFSAAP DCFTALHETA LTIMRHLDLN
DVLEAIVLHA TRLAGTSDGY IDLLSPDGTQ MEMKIGVGWY AEHCREPIDI GDGIGGRVWQ
TGKPMIVRDY RTWEGRVPFL DSSSIGTIVA VPLRSGSTVI GVLGISYFES DRPVADALVD
MLLRFADLAA IAIGNARLYT IVQNELAERR RIEAELRENE QQLRRLYAIT RRQAQELHLI
GQVREAIARE IDLPALFRVV VESINATFGY TLVCIYLRDG DNLILQHQVG YPSPINRIPL
DKGVISRTIL SGRPTLITDV RSDPNFIGVM DNITSEICVP LCDQERVIGA LNIESVDGVV
LTEDDLRLIT ELTGHINVAI ERARLYEQLW RRVQQLDALY DIMTDMIGNL DLDAVLQTIV
TRMIALLRAT HGMIALYDPE QRNLRIHYST GMDHNYANKR LALGEGLIGK VALTRQPLVV
YNYEHWEGQS PVFRSMPSSN VLAAPLLAGD ELIGTLSVGD VSLARVFTND DIRLLSMFAQ
QATIAIKNAR LFAEVQHLAI TDPLMGIYNR RYFFSAAARE FERARRHRHT LAILIADLDN
FKQINDHYGH PIGDQVLQAV SNTFRRELRS IDLLARYGGE EIIVLLPETD CSGVIRVVER
LRSRLLEAIA TERGAIHITA SFGAAVSQRI NAPDVETLIG SADRALLRAK QQGKDRLVIW
CDACAANGVC LLAPPEACDR RITVVSSTNT SPEKTA
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