Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2469 |
Symbol | |
ID | 5539950 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 3171315 |
End bp | 3173282 |
Gene Length | 1968 bp |
Protein Length | 655 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640894599 |
Product | multi-sensor hybrid histidine kinase |
Protein accession | YP_001432567 |
Protein GI | 156742438 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.344805 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.830162 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCATGGA GCAGATCGTG TTGCGACGAT AACCATCACT GTGCCATTGC TCACGAAGGC AGTATACGCA TGGTGCAAAA CCTTATCGTG AATCGTCCAG GAGTGTTCAT TGCCTCTTAT AGTGGGCTGG CGCTTCTGCT CAGCGGGCTG ACGATTGTGA TACGCGGTTC CGAATATCTC CTCTACCTGC TGATATGGCC CATCATCATG AGCGCTGCGC TGGCTCTCTG GCGGATGTAT CTGATTCTGG TCGGTATTGG CGTGGCAGTG ACGGCGATCA CATTGCCGTT GGTCGTTCCG AATCTCAACG AGTCGGCAAT GACGGCACTG GCAGCCGCCC TGGCTGCGGT GCTTTTCTGT GAAAGCATCT ATCGGTTGAT GGATCGTCAG CGCGCTATGG CGCGCGCCTT GCGGGAGAGC GAAGAGCGAT TCCGCTGCAC CTTCGAGCGC GCCCCCGCGC CAATGGCAGT GACCGATGTC CAGGGTCGCT TGAAGTGGTT CAATCAGCGC CTCTGCGATG CGCTGGGGTA CAAACGCGAT GAACTCAACC AGCAGATGAT GAGTCGTTTT GCGTATTCAG ACGACCAGAA CCTTCGTTTG CACCCCGCAC TGCTGGCATC GCCCGATGGA GAGGCGGCGA TTGAAAAACG CTATGTCGCA AAAGATGGTC GGGTTATTCC TATGCTGGTC AGGGGAACAT TGTTGCACAA CGCCGCCGGA GAACCACACG AGGTTCTGGT CATTTTCTTC GATCTGACGG CGCAGCGCGA AGCGGAAGCG CAGCGCCTGG CGCTGGAGCG TCAGATGCTC GAAGTTCAAC GACTCGAAAG CCTGGGGATA CTCGCAGGAG GCGTCGCGCA CAACTTTAAC AATCTGCTGG CGAGCATCCT GGGAAACACG AATCTAGCGT TGCTCGACAC CCCGCCCCAT TCACCGGCGC GCCCATGTCT GGAGCAGGTT GAGTCGGACG TTCAACGCGC GACTGAACTG ACCCGGCAGA TGCTTGCGTA TACCGGGCGC GGGCAGGTAA TGCGCGAAAC CATTGATGTG AACGCGGATC TCAATGCTAT GACCCCGCTC CTGCGCGCTG TGATCCCCTC GGCTATCTCC ATCGACTATC AGTGCGAACA GGAGTCGTTG AAGGTCTGCT TTGAGCGGGT GCAGTTGCGT CAGATTATCG TAGCACTGGT CAATAACGCA GCCGAGTCCA TCGGTGATCA GCCGGGGCAG ATTGTGATTA CCACTGCCGA GCGCACATTT GATGCAGCAA ATCTCCCCTC CTCCGCCATT GGCACAGAGA TGCGAGAAGG ACGCTACGCC ATTATCGACG TGCGCGATAC CGGATGCGGC ATCGACCGGC AAACGATGGA ACGCATGTTC GATCCATTTT TCACAACGAA ACCGGGCAGG CGCGGGCTGG GCCTCGCGGC GACGCTGGGC ATTGTGCGCA GTCACAGCGG TGCGATTCAG GTCGAGAGCG CTCCCAGACA GGGGAGTGTG TTTCGGGTTT TCATCCCGGT CGAGACGCTA ATTCCAGAAA CGCCATCGTC TTCACCATCC CTCCCCCGCC TCGAAGCCGC GCAACCGGAA GTTCGTCAAT CGCAGGGCAT CGTGCTGGTG ATCGATGATG AACGGTCGGT ACGCTCGATG GCGGCGCGCA TGGTCGAGCG TTTAGGGTTC GAGACCCTTC AGGCGTCCGA CGGAGAGGAT GGCGTTGCCT TATTCAATGC CCATGCCGAC TCGATTGCCT GTGTGTTGCT GGATGTGTCG ATGCCGGTAA TGGATGGAGC GCAGGCGCTT CAGATAATGC GCGCCATCCG CCCTGATGCG CCGATTGTCT TCATGAGCGG GTACGCCGGT GAAGAACTGG CGGCGCGCTT CGGGCAACTC CAACCGAGTG GGTTCCTGTA CAAACCGTTC GATACCGCAG AACTCAAAGC CTGCCTGGAT GCGGCGCTGA AGAAGTGA
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Protein sequence | MAWSRSCCDD NHHCAIAHEG SIRMVQNLIV NRPGVFIASY SGLALLLSGL TIVIRGSEYL LYLLIWPIIM SAALALWRMY LILVGIGVAV TAITLPLVVP NLNESAMTAL AAALAAVLFC ESIYRLMDRQ RAMARALRES EERFRCTFER APAPMAVTDV QGRLKWFNQR LCDALGYKRD ELNQQMMSRF AYSDDQNLRL HPALLASPDG EAAIEKRYVA KDGRVIPMLV RGTLLHNAAG EPHEVLVIFF DLTAQREAEA QRLALERQML EVQRLESLGI LAGGVAHNFN NLLASILGNT NLALLDTPPH SPARPCLEQV ESDVQRATEL TRQMLAYTGR GQVMRETIDV NADLNAMTPL LRAVIPSAIS IDYQCEQESL KVCFERVQLR QIIVALVNNA AESIGDQPGQ IVITTAERTF DAANLPSSAI GTEMREGRYA IIDVRDTGCG IDRQTMERMF DPFFTTKPGR RGLGLAATLG IVRSHSGAIQ VESAPRQGSV FRVFIPVETL IPETPSSSPS LPRLEAAQPE VRQSQGIVLV IDDERSVRSM AARMVERLGF ETLQASDGED GVALFNAHAD SIACVLLDVS MPVMDGAQAL QIMRAIRPDA PIVFMSGYAG EELAARFGQL QPSGFLYKPF DTAELKACLD AALKK
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