Gene Rcas_2469 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2469 
Symbol 
ID5539950 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp3171315 
End bp3173282 
Gene Length1968 bp 
Protein Length655 aa 
Translation table11 
GC content58% 
IMG OID640894599 
Productmulti-sensor hybrid histidine kinase 
Protein accessionYP_001432567 
Protein GI156742438 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.344805 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.830162 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCATGGA GCAGATCGTG TTGCGACGAT AACCATCACT GTGCCATTGC TCACGAAGGC 
AGTATACGCA TGGTGCAAAA CCTTATCGTG AATCGTCCAG GAGTGTTCAT TGCCTCTTAT
AGTGGGCTGG CGCTTCTGCT CAGCGGGCTG ACGATTGTGA TACGCGGTTC CGAATATCTC
CTCTACCTGC TGATATGGCC CATCATCATG AGCGCTGCGC TGGCTCTCTG GCGGATGTAT
CTGATTCTGG TCGGTATTGG CGTGGCAGTG ACGGCGATCA CATTGCCGTT GGTCGTTCCG
AATCTCAACG AGTCGGCAAT GACGGCACTG GCAGCCGCCC TGGCTGCGGT GCTTTTCTGT
GAAAGCATCT ATCGGTTGAT GGATCGTCAG CGCGCTATGG CGCGCGCCTT GCGGGAGAGC
GAAGAGCGAT TCCGCTGCAC CTTCGAGCGC GCCCCCGCGC CAATGGCAGT GACCGATGTC
CAGGGTCGCT TGAAGTGGTT CAATCAGCGC CTCTGCGATG CGCTGGGGTA CAAACGCGAT
GAACTCAACC AGCAGATGAT GAGTCGTTTT GCGTATTCAG ACGACCAGAA CCTTCGTTTG
CACCCCGCAC TGCTGGCATC GCCCGATGGA GAGGCGGCGA TTGAAAAACG CTATGTCGCA
AAAGATGGTC GGGTTATTCC TATGCTGGTC AGGGGAACAT TGTTGCACAA CGCCGCCGGA
GAACCACACG AGGTTCTGGT CATTTTCTTC GATCTGACGG CGCAGCGCGA AGCGGAAGCG
CAGCGCCTGG CGCTGGAGCG TCAGATGCTC GAAGTTCAAC GACTCGAAAG CCTGGGGATA
CTCGCAGGAG GCGTCGCGCA CAACTTTAAC AATCTGCTGG CGAGCATCCT GGGAAACACG
AATCTAGCGT TGCTCGACAC CCCGCCCCAT TCACCGGCGC GCCCATGTCT GGAGCAGGTT
GAGTCGGACG TTCAACGCGC GACTGAACTG ACCCGGCAGA TGCTTGCGTA TACCGGGCGC
GGGCAGGTAA TGCGCGAAAC CATTGATGTG AACGCGGATC TCAATGCTAT GACCCCGCTC
CTGCGCGCTG TGATCCCCTC GGCTATCTCC ATCGACTATC AGTGCGAACA GGAGTCGTTG
AAGGTCTGCT TTGAGCGGGT GCAGTTGCGT CAGATTATCG TAGCACTGGT CAATAACGCA
GCCGAGTCCA TCGGTGATCA GCCGGGGCAG ATTGTGATTA CCACTGCCGA GCGCACATTT
GATGCAGCAA ATCTCCCCTC CTCCGCCATT GGCACAGAGA TGCGAGAAGG ACGCTACGCC
ATTATCGACG TGCGCGATAC CGGATGCGGC ATCGACCGGC AAACGATGGA ACGCATGTTC
GATCCATTTT TCACAACGAA ACCGGGCAGG CGCGGGCTGG GCCTCGCGGC GACGCTGGGC
ATTGTGCGCA GTCACAGCGG TGCGATTCAG GTCGAGAGCG CTCCCAGACA GGGGAGTGTG
TTTCGGGTTT TCATCCCGGT CGAGACGCTA ATTCCAGAAA CGCCATCGTC TTCACCATCC
CTCCCCCGCC TCGAAGCCGC GCAACCGGAA GTTCGTCAAT CGCAGGGCAT CGTGCTGGTG
ATCGATGATG AACGGTCGGT ACGCTCGATG GCGGCGCGCA TGGTCGAGCG TTTAGGGTTC
GAGACCCTTC AGGCGTCCGA CGGAGAGGAT GGCGTTGCCT TATTCAATGC CCATGCCGAC
TCGATTGCCT GTGTGTTGCT GGATGTGTCG ATGCCGGTAA TGGATGGAGC GCAGGCGCTT
CAGATAATGC GCGCCATCCG CCCTGATGCG CCGATTGTCT TCATGAGCGG GTACGCCGGT
GAAGAACTGG CGGCGCGCTT CGGGCAACTC CAACCGAGTG GGTTCCTGTA CAAACCGTTC
GATACCGCAG AACTCAAAGC CTGCCTGGAT GCGGCGCTGA AGAAGTGA
 
Protein sequence
MAWSRSCCDD NHHCAIAHEG SIRMVQNLIV NRPGVFIASY SGLALLLSGL TIVIRGSEYL 
LYLLIWPIIM SAALALWRMY LILVGIGVAV TAITLPLVVP NLNESAMTAL AAALAAVLFC
ESIYRLMDRQ RAMARALRES EERFRCTFER APAPMAVTDV QGRLKWFNQR LCDALGYKRD
ELNQQMMSRF AYSDDQNLRL HPALLASPDG EAAIEKRYVA KDGRVIPMLV RGTLLHNAAG
EPHEVLVIFF DLTAQREAEA QRLALERQML EVQRLESLGI LAGGVAHNFN NLLASILGNT
NLALLDTPPH SPARPCLEQV ESDVQRATEL TRQMLAYTGR GQVMRETIDV NADLNAMTPL
LRAVIPSAIS IDYQCEQESL KVCFERVQLR QIIVALVNNA AESIGDQPGQ IVITTAERTF
DAANLPSSAI GTEMREGRYA IIDVRDTGCG IDRQTMERMF DPFFTTKPGR RGLGLAATLG
IVRSHSGAIQ VESAPRQGSV FRVFIPVETL IPETPSSSPS LPRLEAAQPE VRQSQGIVLV
IDDERSVRSM AARMVERLGF ETLQASDGED GVALFNAHAD SIACVLLDVS MPVMDGAQAL
QIMRAIRPDA PIVFMSGYAG EELAARFGQL QPSGFLYKPF DTAELKACLD AALKK