| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2460 |
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| Symbol | |
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| ID | 5539941 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 3160762 |
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| End bp | 3161682 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640894590 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001432558 |
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| Protein GI | 156742429 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00377] anti-anti-sigma factor |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0675728 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCAGACA ATTCCGCGTC CGAGGTCGAG CAACTTCGTC AGCGCTGCGC AGCCCTTGAG
GACGAACTGC GCGCGGTTGA GGAGCGCTTG CGTTTCTTTG TCGAGCATTC GCCCGCAGCG
ATCGCTATGC TGGATACCGA AATGCGCTAT ATCCTGGCAA GCCAACGCTG GTTGACGGAT
TACGGACTGG AAGGGATGAA CATTGTGGGG CGCTCCCACT ACGAGATATT TCCCGATCTG
CCCGAACGCT GGAAGGAGAT TCATCGTCGC GCGCTCGCAG GCGCTTTTGA GGAAGCGGAG
GAAGATCCCT GGACACGGGA GGACGGATCG ACGGAATGGA TCACCTGGAA ATGCTACCCC
TGGTTCAAGG GTGATGGCGC TATCGGCGGG ATCGTCTTCT TCACTGAAGT GGTAACGAAG
CGCATTCGGG AACGGCAGGA ACTGGAAGAA AGCCGCGAAC AACTGCGCGC GACGGTCGAG
GAACAGGAGC GCCTCATCCA GGCGATCCGT GAAATGTCCA CGCCGGTCGT GCCGATCTAC
GACGAAATTA TCGTTCTTCC GCTCGTCGGC TCGATCGACA GCCGACGCAG CGCGCAGATC
ATGGAGGCGT TGCTCAGCGG CATTCAGCAC TACGCCGCCG AAATCGCAAT CATTGACATT
ACCGGTGTAT CGGTGGTGGA TACGTCGGTC GCCAATCACC TGATCCAGAC GACGCGCGCC
GCATCGCTGC TCGGCGCACA CTGTGTGCTC GTCGGCATCT CGGCGGAAGT GGCGCAGGCA
ATGGTCCATT TGGGGGTCGA TCTGAGCACG GTGGTGACGC GCAGCAATTT GCAGGCGGGC
ATCGAATATG CGCTCGACCG CCTGGGCAAG CAGATTACAA CCCGTGTGTC TGCGCCAACG
CCGGATCTCC TTGTTCGATG A
|
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| Protein sequence | MSDNSASEVE QLRQRCAALE DELRAVEERL RFFVEHSPAA IAMLDTEMRY ILASQRWLTD
YGLEGMNIVG RSHYEIFPDL PERWKEIHRR ALAGAFEEAE EDPWTREDGS TEWITWKCYP
WFKGDGAIGG IVFFTEVVTK RIRERQELEE SREQLRATVE EQERLIQAIR EMSTPVVPIY
DEIIVLPLVG SIDSRRSAQI MEALLSGIQH YAAEIAIIDI TGVSVVDTSV ANHLIQTTRA
ASLLGAHCVL VGISAEVAQA MVHLGVDLST VVTRSNLQAG IEYALDRLGK QITTRVSAPT
PDLLVR
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