Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2420 |
Symbol | |
ID | 5539901 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 3113063 |
End bp | 3114172 |
Gene Length | 1110 bp |
Protein Length | 369 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640894550 |
Product | oligopeptide/dipeptide ABC transporter, ATPase subunit |
Protein accession | YP_001432518 |
Protein GI | 156742389 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4608] ABC-type oligopeptide transport system, ATPase component |
TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATACCG CAAAGAAAAA TGGCACATCC GACGAGATTT TGCTCGAAGT TCGTGGGCTA AAGAAGCATT TTCCGATTCA GAGCGGTTTC CTCCGGCGCG TGACCGGGTA TGTCAAAGCC GTCGATGGTA TTGATTTCTA TATCAAGAAG GGTGAGACCC TCGGTCTCGT CGGTGAGTCA GGGTGCGGCA AGAGTACGAC CGGACGCACC ATCCTTCGCC TCCTCGATCC GACCGCAGGC GAGATTATTT TCGATGATCC GAATATTGGC AAGGTAGACC TGGCAAAACT CAATCGCGCG CAACTCACGC GGGTCCGCCC GAATATGCAG ATTATCTTCC AGGACCCCTT CTCGTCACTG AATCCGCGTC TGACGGTCGG GCAGATCGTT GGTGAACCGC TTGAAATCCA GAAGGTTGCT TCCGGTCAGG CGCTCAAGGA TCGCGTCGCT GAGTTGCTCC AGGAAGTCGG TATCCGCCCT GAGAATATGA CGCGCTACCC GCACGCTTTC TCCGGTGGGC AACGCCAACG TATCGGTATT GCGCGCGCCC TGGCGCTCAA CCCAAAACTG ATCGTCTGCG ATGAGCCGGT GTCGGCGCTC GATGTGTCGA TTCAGGCGCA GGTGCTCAAT CTTCTCGAAG ATCTTCAGGA GAAGTACGAC CTGACCTACC TCTTTGTGGC GCACGATCTG AGCGTTGTTG AACATATTTC CGACCGGGTG GCGGTGATGT ACGTGGGCTA TATCGTCGAA ATGGCAAGCA CCGAAGAACT CTATTACCAC CCCAAACATC CGTACACCGA GGCGCTCCTT GCTGCTATTC CGAAACCCGA TCCGCGCAAA CGCACGCGCC CGATCAAACT CCCTGGCGAC GTGCCCAGCC CGGCGAATCC TCCTTCGGGG TGCTATTTCC ATCCGCGCTG CCGGTATGCT GAGGAGATCT GTAAGGTCGA ACGTCCACCG CTGCGCGATA TTGGTGGTGA GCACTGGGTT GCCTGTCATT TCGCTGAGCA GTTGCAGTTG CAGGGTGTGA CGCGCCTGAA CGAAATCCCG CTCATTGAGC TTCCCAAGCG CCAGGCGTCT GTGCCGGCGA CAACGACAGC AACGACGTAG
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Protein sequence | MDTAKKNGTS DEILLEVRGL KKHFPIQSGF LRRVTGYVKA VDGIDFYIKK GETLGLVGES GCGKSTTGRT ILRLLDPTAG EIIFDDPNIG KVDLAKLNRA QLTRVRPNMQ IIFQDPFSSL NPRLTVGQIV GEPLEIQKVA SGQALKDRVA ELLQEVGIRP ENMTRYPHAF SGGQRQRIGI ARALALNPKL IVCDEPVSAL DVSIQAQVLN LLEDLQEKYD LTYLFVAHDL SVVEHISDRV AVMYVGYIVE MASTEELYYH PKHPYTEALL AAIPKPDPRK RTRPIKLPGD VPSPANPPSG CYFHPRCRYA EEICKVERPP LRDIGGEHWV ACHFAEQLQL QGVTRLNEIP LIELPKRQAS VPATTTATT
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