Gene Rcas_2379 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2379 
Symbol 
ID5539860 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp3067343 
End bp3069370 
Gene Length2028 bp 
Protein Length675 aa 
Translation table11 
GC content60% 
IMG OID640894511 
ProductVanW family protein 
Protein accessionYP_001432479 
Protein GI156742350 
COG category[V] Defense mechanisms 
COG ID[COG2720] Uncharacterized vancomycin resistance protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.548137 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCGGCTG ACCAGGTCCA TTTCTCGTCA ACTGCCGAAG CGGCGGAGCG TCAGGGCTTT 
CCGGTTACAA CGCATCCGCG CGTGCAGCGA CCGCGCCGCC GTGGCGACGG ATGGCTGTGG
TTGACGCTTG CGGCGCTTAT GCTTCTTGTG CTGGCGCTTG CCGGCGGTGC AGCATATGTC
TACCGGTCGT ATGAAGGGCG GATCTATCCA AATGTTTCGA TCCAGGGCAT TGCGGTTGGC
GACATGACGC CGGATCAGGC TGAGGCGGCG CTGCGGGCGC GGTATGCCGC ATTCCTTCGT
CAACCTCTCA TTATCACCTA TGGCGACCGT CAGTGGACGC CAACCCTTGA CGATCTGGGG
ATGACATTCG ATTTTCGTGG CGCCGTCGAT AGAGCGTACA ATGCCGGGCG TGGCAATGGT
CTGATCGGTG ATGTGCAGGA AATCGCTGCG ATCTGGCAGC ACGGTCTTGA GATTCCGCTG
CGCGTCTCAT ATGACGAAAT GCGCGCCCAG GCGTATCTGG CGCACCTGGC GCGCGAGATT
GAGCGCGCTC CTGCCGATGC TCAGGTGCGC CTTGATGGCG AGCAAGTCGC AACTGTCGGT
TCGGTTATCG GACGTCAGGT GCTGGTGGAT GCAACGCTGT CGCAGGTGTC ACAGCAATTG
CAGTCCCTGG CGCCGGCCAC AATTCCGATC CAGACCCGTG AGTTGCCGCC TCGCCTCGAT
GATGCCGCAG TTGCGGCTGC ACGATCGCGG ATCGAGACGA TACTTCAGGG TCCGTTGTCG
CTGCGCGTTG GGAAACATGA GTACGAATGG ACGGTCGATG AACTGGCGCA GATGATCGTC
ATCGAGCGCG TTCCTTCGGG TGAGGGCGAC AGGGTTGTTG TAACGCTCGA CCGAAGCGCG
ATTGAGCAGC GCCTTCGCCA AATTGCCGAT GAAACGGAAA AACCCGGCAC TCGCCCACGT
GTGGCATGGA ACAACGGTGA TCTCAAGATC ACCAAACCTG GCAAGCCAGG GCTTCGTCTC
GATGAAGCGC GCGCCCGCGA TATGGTGCTT GCTGCGCTGA CCGGGCGCGA CCGAACGCTT
GATCTGCCGA TGATCCCGAC CGATCCGCCG GTGACGGAAG CGAATCTCCA CCAACTGGGC
ATCCGTGAAT TAGTGAGTGT TGGCAAGAGC GATTTCACCG GCTCAGCCGC CTATCGCGTG
CATAACATCG GCGTTGGGAT GCAATTGCTG AACGGGTTGC TGGTGGCGCC CGGCGAGGAA
TTTTCGTTCA ATAAGAATAT CGGGCAGATC AATGCTGCTA ATGGGTTCGT TGAGGGCGCC
GCGATCATTC AGAACCGGAC GCAACAGGAG TTCGGCGGCG GTATTTGCCA GGACTCGACG
ACGCTGTTTC GCGCCGCTTT CTGGGCTGGA TTGCCGATCA CCGAGCGCTG GGGACATTCG
TTCTATATCA GTTGGTACGA TAAATATGCC CTCGGTCCGC GTGGCAATGG TCCTGGACTT
GATGCGACGA TCTTTACCGG CGGACCAGAC TTGAAGTTTG TGAATGATAC CGGTGCGTGG
CTGCTCATTC AGGCATGGTC GGACCCAAAG ACCGGTGTGG CGCAGATCGA GTTGTATGGC
ACAAAGCCCA ATCGGACGGT CGATCTCACC CACAAAGTGT ATGATCACAC TCCCGCGCCC
ACGGAGCCGG TTTTTGTTGC GGACCCCAAA GTGCCGCAGG GGACGATCAA ACATACCGAT
AAGGCGCGTG GTGGCATGAC GATTGATGTG TACCGTCTGG TGATCGAGAA TGGTGTGCCG
CGCCCGCCTG AGTTGTTTCG CACTCGCTTC CGACCCTGGC CCAACATCTA TACCTTGAAC
CCTGCTGACA TTGGTCCAGA CAGCAAGCCG CTCATTCCGT TTCCGTCCAA CGAGCAACCG
GCGCAACCTG CGCCGCCGGT CGAGCAACCT ACTGAACCGC CGCCACCGCC AGGGGTTGAG
CCGCAACCGG AGCAGAATTC CGGCGAACAA CCACCGGCGA ATGGATAG
 
Protein sequence
MSADQVHFSS TAEAAERQGF PVTTHPRVQR PRRRGDGWLW LTLAALMLLV LALAGGAAYV 
YRSYEGRIYP NVSIQGIAVG DMTPDQAEAA LRARYAAFLR QPLIITYGDR QWTPTLDDLG
MTFDFRGAVD RAYNAGRGNG LIGDVQEIAA IWQHGLEIPL RVSYDEMRAQ AYLAHLAREI
ERAPADAQVR LDGEQVATVG SVIGRQVLVD ATLSQVSQQL QSLAPATIPI QTRELPPRLD
DAAVAAARSR IETILQGPLS LRVGKHEYEW TVDELAQMIV IERVPSGEGD RVVVTLDRSA
IEQRLRQIAD ETEKPGTRPR VAWNNGDLKI TKPGKPGLRL DEARARDMVL AALTGRDRTL
DLPMIPTDPP VTEANLHQLG IRELVSVGKS DFTGSAAYRV HNIGVGMQLL NGLLVAPGEE
FSFNKNIGQI NAANGFVEGA AIIQNRTQQE FGGGICQDST TLFRAAFWAG LPITERWGHS
FYISWYDKYA LGPRGNGPGL DATIFTGGPD LKFVNDTGAW LLIQAWSDPK TGVAQIELYG
TKPNRTVDLT HKVYDHTPAP TEPVFVADPK VPQGTIKHTD KARGGMTIDV YRLVIENGVP
RPPELFRTRF RPWPNIYTLN PADIGPDSKP LIPFPSNEQP AQPAPPVEQP TEPPPPPGVE
PQPEQNSGEQ PPANG