Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2379 |
Symbol | |
ID | 5539860 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 3067343 |
End bp | 3069370 |
Gene Length | 2028 bp |
Protein Length | 675 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640894511 |
Product | VanW family protein |
Protein accession | YP_001432479 |
Protein GI | 156742350 |
COG category | [V] Defense mechanisms |
COG ID | [COG2720] Uncharacterized vancomycin resistance protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.548137 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCGGCTG ACCAGGTCCA TTTCTCGTCA ACTGCCGAAG CGGCGGAGCG TCAGGGCTTT CCGGTTACAA CGCATCCGCG CGTGCAGCGA CCGCGCCGCC GTGGCGACGG ATGGCTGTGG TTGACGCTTG CGGCGCTTAT GCTTCTTGTG CTGGCGCTTG CCGGCGGTGC AGCATATGTC TACCGGTCGT ATGAAGGGCG GATCTATCCA AATGTTTCGA TCCAGGGCAT TGCGGTTGGC GACATGACGC CGGATCAGGC TGAGGCGGCG CTGCGGGCGC GGTATGCCGC ATTCCTTCGT CAACCTCTCA TTATCACCTA TGGCGACCGT CAGTGGACGC CAACCCTTGA CGATCTGGGG ATGACATTCG ATTTTCGTGG CGCCGTCGAT AGAGCGTACA ATGCCGGGCG TGGCAATGGT CTGATCGGTG ATGTGCAGGA AATCGCTGCG ATCTGGCAGC ACGGTCTTGA GATTCCGCTG CGCGTCTCAT ATGACGAAAT GCGCGCCCAG GCGTATCTGG CGCACCTGGC GCGCGAGATT GAGCGCGCTC CTGCCGATGC TCAGGTGCGC CTTGATGGCG AGCAAGTCGC AACTGTCGGT TCGGTTATCG GACGTCAGGT GCTGGTGGAT GCAACGCTGT CGCAGGTGTC ACAGCAATTG CAGTCCCTGG CGCCGGCCAC AATTCCGATC CAGACCCGTG AGTTGCCGCC TCGCCTCGAT GATGCCGCAG TTGCGGCTGC ACGATCGCGG ATCGAGACGA TACTTCAGGG TCCGTTGTCG CTGCGCGTTG GGAAACATGA GTACGAATGG ACGGTCGATG AACTGGCGCA GATGATCGTC ATCGAGCGCG TTCCTTCGGG TGAGGGCGAC AGGGTTGTTG TAACGCTCGA CCGAAGCGCG ATTGAGCAGC GCCTTCGCCA AATTGCCGAT GAAACGGAAA AACCCGGCAC TCGCCCACGT GTGGCATGGA ACAACGGTGA TCTCAAGATC ACCAAACCTG GCAAGCCAGG GCTTCGTCTC GATGAAGCGC GCGCCCGCGA TATGGTGCTT GCTGCGCTGA CCGGGCGCGA CCGAACGCTT GATCTGCCGA TGATCCCGAC CGATCCGCCG GTGACGGAAG CGAATCTCCA CCAACTGGGC ATCCGTGAAT TAGTGAGTGT TGGCAAGAGC GATTTCACCG GCTCAGCCGC CTATCGCGTG CATAACATCG GCGTTGGGAT GCAATTGCTG AACGGGTTGC TGGTGGCGCC CGGCGAGGAA TTTTCGTTCA ATAAGAATAT CGGGCAGATC AATGCTGCTA ATGGGTTCGT TGAGGGCGCC GCGATCATTC AGAACCGGAC GCAACAGGAG TTCGGCGGCG GTATTTGCCA GGACTCGACG ACGCTGTTTC GCGCCGCTTT CTGGGCTGGA TTGCCGATCA CCGAGCGCTG GGGACATTCG TTCTATATCA GTTGGTACGA TAAATATGCC CTCGGTCCGC GTGGCAATGG TCCTGGACTT GATGCGACGA TCTTTACCGG CGGACCAGAC TTGAAGTTTG TGAATGATAC CGGTGCGTGG CTGCTCATTC AGGCATGGTC GGACCCAAAG ACCGGTGTGG CGCAGATCGA GTTGTATGGC ACAAAGCCCA ATCGGACGGT CGATCTCACC CACAAAGTGT ATGATCACAC TCCCGCGCCC ACGGAGCCGG TTTTTGTTGC GGACCCCAAA GTGCCGCAGG GGACGATCAA ACATACCGAT AAGGCGCGTG GTGGCATGAC GATTGATGTG TACCGTCTGG TGATCGAGAA TGGTGTGCCG CGCCCGCCTG AGTTGTTTCG CACTCGCTTC CGACCCTGGC CCAACATCTA TACCTTGAAC CCTGCTGACA TTGGTCCAGA CAGCAAGCCG CTCATTCCGT TTCCGTCCAA CGAGCAACCG GCGCAACCTG CGCCGCCGGT CGAGCAACCT ACTGAACCGC CGCCACCGCC AGGGGTTGAG CCGCAACCGG AGCAGAATTC CGGCGAACAA CCACCGGCGA ATGGATAG
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Protein sequence | MSADQVHFSS TAEAAERQGF PVTTHPRVQR PRRRGDGWLW LTLAALMLLV LALAGGAAYV YRSYEGRIYP NVSIQGIAVG DMTPDQAEAA LRARYAAFLR QPLIITYGDR QWTPTLDDLG MTFDFRGAVD RAYNAGRGNG LIGDVQEIAA IWQHGLEIPL RVSYDEMRAQ AYLAHLAREI ERAPADAQVR LDGEQVATVG SVIGRQVLVD ATLSQVSQQL QSLAPATIPI QTRELPPRLD DAAVAAARSR IETILQGPLS LRVGKHEYEW TVDELAQMIV IERVPSGEGD RVVVTLDRSA IEQRLRQIAD ETEKPGTRPR VAWNNGDLKI TKPGKPGLRL DEARARDMVL AALTGRDRTL DLPMIPTDPP VTEANLHQLG IRELVSVGKS DFTGSAAYRV HNIGVGMQLL NGLLVAPGEE FSFNKNIGQI NAANGFVEGA AIIQNRTQQE FGGGICQDST TLFRAAFWAG LPITERWGHS FYISWYDKYA LGPRGNGPGL DATIFTGGPD LKFVNDTGAW LLIQAWSDPK TGVAQIELYG TKPNRTVDLT HKVYDHTPAP TEPVFVADPK VPQGTIKHTD KARGGMTIDV YRLVIENGVP RPPELFRTRF RPWPNIYTLN PADIGPDSKP LIPFPSNEQP AQPAPPVEQP TEPPPPPGVE PQPEQNSGEQ PPANG
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