Gene Rcas_2373 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2373 
Symbol 
ID5539854 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp3059941 
End bp3061215 
Gene Length1275 bp 
Protein Length424 aa 
Translation table11 
GC content60% 
IMG OID640894505 
Productputative PAS/PAC sensor protein 
Protein accessionYP_001432473 
Protein GI156742344 
COG category[T] Signal transduction mechanisms 
COG ID[COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00377] anti-anti-sigma factor 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0322633 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.629706 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCTCT CTGCAACCAA CCACAACACT GAAGCCGAAT TGTCACGTCT GCGCCAGCGT 
GTTGCGGAAC TGGAAGAACA GTTGGCGCGA CTCGAGGCAT CCAATGGCGT GGCGACGGCG
AACTTCGATA TGCACCGTGT GCTCGACGCT CTGGCTGTGC CGATTTTCTA CAAGGACGCC
GACGGGCGCT ATGTGGGGTG CAATGAGGCG TTTGCCGCAT TCCTGGGGCG CGATCGCGCC
GGGATCATCG GCAAGACCGC CTACGACCTG GCGCCGCCGC ACCTGGCAGA GGTGTACCAT
CAGGCCGATC TGAACCTGAT GCGTCAGCGG ACATTACAGG TCTACGAGGC TGAAGTGATG
ACCGCTCAGG GTGACAATCG CACGGTTCAG TTTTCCAAGG CGCCAATTTT CGACGCAGCC
GGGAATGTGG TCGGTTTGAT CGGCGCCATT CAGGACATCA CCGAGCGCAA GAAGGCGGAA
CAGGAGATGG CGCGCCTGAT GGAAGTCCTC GAGAATACGC CCGATGTCAT CGGCATGGCA
GACGCGCAGG GGCGGGTCGT CTACATGAAC AAAGCCGGTC GGCGGTTGCG CGGGCTGTCT
TCCGACGCCG ATCTCAAGAG CATGCAGATC GCCGATTTCC ATCCTGCCTG GGCGGCGAAG
ATCATTTATG AAGAAGCCAT TCCAATCGCC GATCACAACG GATATTGGAG CGGCGATCTG
GCCATGGTCA ATGCGCGCGG CGAAGAGATT CCGGTATCGC AGGTGCTTCT GGCGCATCAC
GATGCCGATG GCAAACTGAC TTACGTGACC GGCATCATGC GCGATATTTC TGAGCGAAAG
AAAGCGGAGC GCGCTTTGCG CGAGCGCGAG GTTCAGGAAC AGGTGATTGA GGCGCAGCGC
GCGGCATTGC GTGAACTGTC CACTCCATTG TTGCCGATTT CGTCTGATGT AGTGGTCATG
CCGATCATCG GCGCCGTTGA TAGCGCCCGC GCGCAACAGA TCATGGACAC GCTGCTCGAG
GGCGTGAGTG AGCACCACGC ATCGCTGGCA ATCCTCGACA TTACCGGTGT CAAGGTGATG
GATACGCAGG TCGCCGGGGC GCTGCTCCAC GCGGCGCATG CGGTGCGGTT GCTCGGCGCG
CAGGTCGTGT TGAGCGGGAT CCGTCCCGAA ATTGCGCAGA CGCTGGTGCA TATCGGCATT
GATATGCGCG ATCTTGTGAC CCGCAGCACG CTGCAACAGG CGATTGCGTT TGCGCTGGAG
CGATTCCGGC AGTAG
 
Protein sequence
MSLSATNHNT EAELSRLRQR VAELEEQLAR LEASNGVATA NFDMHRVLDA LAVPIFYKDA 
DGRYVGCNEA FAAFLGRDRA GIIGKTAYDL APPHLAEVYH QADLNLMRQR TLQVYEAEVM
TAQGDNRTVQ FSKAPIFDAA GNVVGLIGAI QDITERKKAE QEMARLMEVL ENTPDVIGMA
DAQGRVVYMN KAGRRLRGLS SDADLKSMQI ADFHPAWAAK IIYEEAIPIA DHNGYWSGDL
AMVNARGEEI PVSQVLLAHH DADGKLTYVT GIMRDISERK KAERALRERE VQEQVIEAQR
AALRELSTPL LPISSDVVVM PIIGAVDSAR AQQIMDTLLE GVSEHHASLA ILDITGVKVM
DTQVAGALLH AAHAVRLLGA QVVLSGIRPE IAQTLVHIGI DMRDLVTRST LQQAIAFALE
RFRQ