Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2373 |
Symbol | |
ID | 5539854 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 3059941 |
End bp | 3061215 |
Gene Length | 1275 bp |
Protein Length | 424 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640894505 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_001432473 |
Protein GI | 156742344 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00377] anti-anti-sigma factor |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0322633 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.629706 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGCTCT CTGCAACCAA CCACAACACT GAAGCCGAAT TGTCACGTCT GCGCCAGCGT GTTGCGGAAC TGGAAGAACA GTTGGCGCGA CTCGAGGCAT CCAATGGCGT GGCGACGGCG AACTTCGATA TGCACCGTGT GCTCGACGCT CTGGCTGTGC CGATTTTCTA CAAGGACGCC GACGGGCGCT ATGTGGGGTG CAATGAGGCG TTTGCCGCAT TCCTGGGGCG CGATCGCGCC GGGATCATCG GCAAGACCGC CTACGACCTG GCGCCGCCGC ACCTGGCAGA GGTGTACCAT CAGGCCGATC TGAACCTGAT GCGTCAGCGG ACATTACAGG TCTACGAGGC TGAAGTGATG ACCGCTCAGG GTGACAATCG CACGGTTCAG TTTTCCAAGG CGCCAATTTT CGACGCAGCC GGGAATGTGG TCGGTTTGAT CGGCGCCATT CAGGACATCA CCGAGCGCAA GAAGGCGGAA CAGGAGATGG CGCGCCTGAT GGAAGTCCTC GAGAATACGC CCGATGTCAT CGGCATGGCA GACGCGCAGG GGCGGGTCGT CTACATGAAC AAAGCCGGTC GGCGGTTGCG CGGGCTGTCT TCCGACGCCG ATCTCAAGAG CATGCAGATC GCCGATTTCC ATCCTGCCTG GGCGGCGAAG ATCATTTATG AAGAAGCCAT TCCAATCGCC GATCACAACG GATATTGGAG CGGCGATCTG GCCATGGTCA ATGCGCGCGG CGAAGAGATT CCGGTATCGC AGGTGCTTCT GGCGCATCAC GATGCCGATG GCAAACTGAC TTACGTGACC GGCATCATGC GCGATATTTC TGAGCGAAAG AAAGCGGAGC GCGCTTTGCG CGAGCGCGAG GTTCAGGAAC AGGTGATTGA GGCGCAGCGC GCGGCATTGC GTGAACTGTC CACTCCATTG TTGCCGATTT CGTCTGATGT AGTGGTCATG CCGATCATCG GCGCCGTTGA TAGCGCCCGC GCGCAACAGA TCATGGACAC GCTGCTCGAG GGCGTGAGTG AGCACCACGC ATCGCTGGCA ATCCTCGACA TTACCGGTGT CAAGGTGATG GATACGCAGG TCGCCGGGGC GCTGCTCCAC GCGGCGCATG CGGTGCGGTT GCTCGGCGCG CAGGTCGTGT TGAGCGGGAT CCGTCCCGAA ATTGCGCAGA CGCTGGTGCA TATCGGCATT GATATGCGCG ATCTTGTGAC CCGCAGCACG CTGCAACAGG CGATTGCGTT TGCGCTGGAG CGATTCCGGC AGTAG
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Protein sequence | MSLSATNHNT EAELSRLRQR VAELEEQLAR LEASNGVATA NFDMHRVLDA LAVPIFYKDA DGRYVGCNEA FAAFLGRDRA GIIGKTAYDL APPHLAEVYH QADLNLMRQR TLQVYEAEVM TAQGDNRTVQ FSKAPIFDAA GNVVGLIGAI QDITERKKAE QEMARLMEVL ENTPDVIGMA DAQGRVVYMN KAGRRLRGLS SDADLKSMQI ADFHPAWAAK IIYEEAIPIA DHNGYWSGDL AMVNARGEEI PVSQVLLAHH DADGKLTYVT GIMRDISERK KAERALRERE VQEQVIEAQR AALRELSTPL LPISSDVVVM PIIGAVDSAR AQQIMDTLLE GVSEHHASLA ILDITGVKVM DTQVAGALLH AAHAVRLLGA QVVLSGIRPE IAQTLVHIGI DMRDLVTRST LQQAIAFALE RFRQ
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