Gene Rcas_2359 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2359 
Symbol 
ID5539840 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp3043952 
End bp3045187 
Gene Length1236 bp 
Protein Length411 aa 
Translation table11 
GC content61% 
IMG OID640894492 
Productbeta-lactamase 
Protein accessionYP_001432460 
Protein GI156742331 
COG category[V] Defense mechanisms 
COG ID[COG1680] Beta-lactamase class C and other penicillin binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.072295 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGATG TGACGGCAAC TCCCGAAAGC GTCGGCCTCA GTTCAGAACG GCTAGAGCGC 
ATTCGCCCGG CGATGCAGCG TTGGATCGAC CGCGGAACGA TTGCAGGCGC AAGCATGATG
CTGGCGCGGC GCGGCAAGAT TGTTTATGCG GAACAGGTTG GGCGCATGAG CAAAGAGTCC
GATGAGGCGC TGCGCAGCGA TGCCGTCTTC CGCATCTACT CGATGACCAA GCCGATTGTC
TGTACCGCCC TGATGACCCT CTACGAAGAG GGGCGGTTTC AGTTAATCAC ACCGCTGGCA
ACGTTCATTC CGGCATTTGC GAACATCAAA GTGCTGCAAC AGGACAAAGA GGTTGCGCCG
CAGCGCCCGA TCACCATCGG CGACTTGATG ACCCACCTCG GCGGGTTCAC CTACGACTTT
CTGATCGACT CGCCAGTTGG CGAGTTGTAC CGCCAGCACG CCCTCATGCA CGACGCCAAC
CGGACGCTGG AGCAGCTCGT GGCCGAACTG GCCCGCCTGC CGCTGGCGTT CCATCCGGGA
TCGAAGTGGC ACTACAGCGT TTCAATCGAC GTTGCAGCCC ATGTCATCGA GATCATTGCC
AACCAACCGT TGCGTCAGTT CCTGCGCGAA CGGATCTTCG ACCCGCTCGG AATGGTCGAT
ACCGATTTCG GCGTCCCGCC GGAGAAGCGC CACCGCCTGG CGGCTATGTA CGGCGTTGGC
GATCTGGGGG CGCGCGGCAT GACGGTGTTG CAAATGTTCT TGAACTGGCA GCAGGGGATT
CTCGAGCGGA TCGATCCACA GGAAAGCTAC CCCGTGGATC GACCGGAGAC CTTCGCGCGC
GGCGGGCATG GGTTGTTCTC AACCACACAG GATTATATGC GCTTCGCGCT CATGCTGGCG
AACGGCGGCG AACTCGACGG GGTGCGCATT CTGGGACGCA AGACGCTGGA ACTCATGCAT
GCCAACCATA TTCCGGCTGC GCTGCTTCCC TGGGAAATCG CCGGATTGAC CTACCCCGGC
TACGGGTTTG GGCTGGGATC GCGCGTGCTG ATGGATGTCG GGCTGTCGGG TATGCCGGGA
ACAGTCGGTG AATTCGGGTG GGCCGGCGCG GCAACGACCT ACTACTGGGT CGATCCGGCG
GAGTCGTTCG TTGGCGTCTT CATGACGCAG TACCAGGGGA TCGATGAGCC GCAGCGGGAT
TTTCGCGTCC TGGCGTACCA GGCGATGGTG GAGTAG
 
Protein sequence
MSDVTATPES VGLSSERLER IRPAMQRWID RGTIAGASMM LARRGKIVYA EQVGRMSKES 
DEALRSDAVF RIYSMTKPIV CTALMTLYEE GRFQLITPLA TFIPAFANIK VLQQDKEVAP
QRPITIGDLM THLGGFTYDF LIDSPVGELY RQHALMHDAN RTLEQLVAEL ARLPLAFHPG
SKWHYSVSID VAAHVIEIIA NQPLRQFLRE RIFDPLGMVD TDFGVPPEKR HRLAAMYGVG
DLGARGMTVL QMFLNWQQGI LERIDPQESY PVDRPETFAR GGHGLFSTTQ DYMRFALMLA
NGGELDGVRI LGRKTLELMH ANHIPAALLP WEIAGLTYPG YGFGLGSRVL MDVGLSGMPG
TVGEFGWAGA ATTYYWVDPA ESFVGVFMTQ YQGIDEPQRD FRVLAYQAMV E