Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2359 |
Symbol | |
ID | 5539840 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 3043952 |
End bp | 3045187 |
Gene Length | 1236 bp |
Protein Length | 411 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640894492 |
Product | beta-lactamase |
Protein accession | YP_001432460 |
Protein GI | 156742331 |
COG category | [V] Defense mechanisms |
COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.072295 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGATG TGACGGCAAC TCCCGAAAGC GTCGGCCTCA GTTCAGAACG GCTAGAGCGC ATTCGCCCGG CGATGCAGCG TTGGATCGAC CGCGGAACGA TTGCAGGCGC AAGCATGATG CTGGCGCGGC GCGGCAAGAT TGTTTATGCG GAACAGGTTG GGCGCATGAG CAAAGAGTCC GATGAGGCGC TGCGCAGCGA TGCCGTCTTC CGCATCTACT CGATGACCAA GCCGATTGTC TGTACCGCCC TGATGACCCT CTACGAAGAG GGGCGGTTTC AGTTAATCAC ACCGCTGGCA ACGTTCATTC CGGCATTTGC GAACATCAAA GTGCTGCAAC AGGACAAAGA GGTTGCGCCG CAGCGCCCGA TCACCATCGG CGACTTGATG ACCCACCTCG GCGGGTTCAC CTACGACTTT CTGATCGACT CGCCAGTTGG CGAGTTGTAC CGCCAGCACG CCCTCATGCA CGACGCCAAC CGGACGCTGG AGCAGCTCGT GGCCGAACTG GCCCGCCTGC CGCTGGCGTT CCATCCGGGA TCGAAGTGGC ACTACAGCGT TTCAATCGAC GTTGCAGCCC ATGTCATCGA GATCATTGCC AACCAACCGT TGCGTCAGTT CCTGCGCGAA CGGATCTTCG ACCCGCTCGG AATGGTCGAT ACCGATTTCG GCGTCCCGCC GGAGAAGCGC CACCGCCTGG CGGCTATGTA CGGCGTTGGC GATCTGGGGG CGCGCGGCAT GACGGTGTTG CAAATGTTCT TGAACTGGCA GCAGGGGATT CTCGAGCGGA TCGATCCACA GGAAAGCTAC CCCGTGGATC GACCGGAGAC CTTCGCGCGC GGCGGGCATG GGTTGTTCTC AACCACACAG GATTATATGC GCTTCGCGCT CATGCTGGCG AACGGCGGCG AACTCGACGG GGTGCGCATT CTGGGACGCA AGACGCTGGA ACTCATGCAT GCCAACCATA TTCCGGCTGC GCTGCTTCCC TGGGAAATCG CCGGATTGAC CTACCCCGGC TACGGGTTTG GGCTGGGATC GCGCGTGCTG ATGGATGTCG GGCTGTCGGG TATGCCGGGA ACAGTCGGTG AATTCGGGTG GGCCGGCGCG GCAACGACCT ACTACTGGGT CGATCCGGCG GAGTCGTTCG TTGGCGTCTT CATGACGCAG TACCAGGGGA TCGATGAGCC GCAGCGGGAT TTTCGCGTCC TGGCGTACCA GGCGATGGTG GAGTAG
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Protein sequence | MSDVTATPES VGLSSERLER IRPAMQRWID RGTIAGASMM LARRGKIVYA EQVGRMSKES DEALRSDAVF RIYSMTKPIV CTALMTLYEE GRFQLITPLA TFIPAFANIK VLQQDKEVAP QRPITIGDLM THLGGFTYDF LIDSPVGELY RQHALMHDAN RTLEQLVAEL ARLPLAFHPG SKWHYSVSID VAAHVIEIIA NQPLRQFLRE RIFDPLGMVD TDFGVPPEKR HRLAAMYGVG DLGARGMTVL QMFLNWQQGI LERIDPQESY PVDRPETFAR GGHGLFSTTQ DYMRFALMLA NGGELDGVRI LGRKTLELMH ANHIPAALLP WEIAGLTYPG YGFGLGSRVL MDVGLSGMPG TVGEFGWAGA ATTYYWVDPA ESFVGVFMTQ YQGIDEPQRD FRVLAYQAMV E
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