| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2307 |
|---|
| Symbol | |
|---|
| ID | 5539788 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 2975561 |
|---|
| End bp | 2976274 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640894440 |
|---|
| Product | rare lipoprotein A |
|---|
| Protein accession | YP_001432408 |
|---|
| Protein GI | 156742279 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4305] Endoglucanase C-terminal domain/subunit and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.956349 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCTTC GCATCCTTGC TTTCGCCGGC GTGTGCCTGC TCCTCGCCGG CATCATTCCT
GTCGTCAGGG CGCAGAACGA CACCCACACC GTGTACCTGC CGCTTGTTGT CCGTGATGCA
CAGTATCGCA CCGGCGAAGG AACCTACTAC GCCGCCGACG GCACGGGCAA CTGCATGTTC
GACCCGTCGC CGCACGACCT GATGGTTGCG GCAATGAACC ACATCGACTA CGACAACGCA
GCGCTCTGTG GCGCCTTTAT CGAGGTCATC GGACCGAAGG GAAGCGTGAC GGTGCGCATC
GTCGACCGTT GCCCGGAGTG CGCCCGAGGC GATGTCGATA TGAGTCCACA GGCATTCGAG
CGGATCGCCG ATCTATCCGC CGGGCGCGTC CCCATCCGCT GGCGCATCGT CAGCCCCAAC
CTCGCCGGAC CCATTGCGTA TCGCTTCAAG GAAGGCAGCA ATCAGTGGTG GACGGCAGTG
CAGATCCGCA ATCACCGCAA TCCTGTCGCG CGGTTCGAGT ATTTGCGCGC CGACGGCCAG
TGGCAAACCG TGCCACGCCA GATGTACAAC TACTTCGTGG CGAGCAGCGG CATGGGACCG
GGACCCTACA CCTTTCGCGT CACTGACATG TACGGCAACG TGCTGACCGA CACGGACATC
CCCTTCGTTG AAGGCGGCGT GATCAACGGC GCAGCGCAGT TTCCGCCGCC CTGA
|
|---|
| Protein sequence | MPLRILAFAG VCLLLAGIIP VVRAQNDTHT VYLPLVVRDA QYRTGEGTYY AADGTGNCMF
DPSPHDLMVA AMNHIDYDNA ALCGAFIEVI GPKGSVTVRI VDRCPECARG DVDMSPQAFE
RIADLSAGRV PIRWRIVSPN LAGPIAYRFK EGSNQWWTAV QIRNHRNPVA RFEYLRADGQ
WQTVPRQMYN YFVASSGMGP GPYTFRVTDM YGNVLTDTDI PFVEGGVING AAQFPPP
|
|---|
| |