| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2280 |
|---|
| Symbol | |
|---|
| ID | 5539761 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 2940933 |
|---|
| End bp | 2941832 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640894413 |
|---|
| Product | glyoxalase/bleomycin resistance protein/dioxygenase |
|---|
| Protein accession | YP_001432381 |
|---|
| Protein GI | 156742252 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2514] Predicted ring-cleavage extradiol dioxygenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.986343 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000540832 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCAACA ACAACGCATC TGGAACCATC CCGCCCGAAA CGACCATTGG GACGGTGCAT
CTGACGGTTG CCGACCTTAA GCGTGCGTGC GCATTTTACA CCGAAACGAT TGGATTTCAG
GCGATGCGCC GCACCCATCA GAGCGCCATA CTGGGAGTGA GCGAACGACC GCTCCTGCTG
CTGACCGAAC TGCCCGGCGC GCGCCGGGCG CGCGGCGTCA CCGGTCTATA CCACTTCGCC
ATTTTGCTCC CTTCCCGGCG CGACCTGGCA ATAACCCTGG CGCACCTGCT GGAACTGCGA
ACACCGCTCC AGGGCGCTTC AGATCATGCC GTCAGTGAAG CGATCTATCT GGCAGACCCC
GACGGGAATG GCATCGAAAT CTACCGTGAC CGACCACGGA CAGAATGGCC CCGCGCCGGC
AGTCAGGTGC GGATGACCGT CGATCCGTTC GATGCCGATG GTGTGCTTGG CGAACTCAAC
CGTGTCCCGG CAACGTGGTC TGGCTTGCCG GCAGGCACGA TCATCGGGCA TATTCATCTG
CACGTTGCGC ATCTGGCGCC GGCGCGATGG TTCTACTGCG ATGTTCTGGG ATTTGCGTTC
ATGCAACGCT TTGGAAGCAG CGCCGAGTTT GTCGCAGCCG GCGGCTACCA CCATCACATC
GGCTACAATG TGTGGGCTGG CATCGGCGCG CCTCCTTCCT CCCCCAATAT GGCCGGTCTG
CGCTGGTTTA CCCTGCGCCT GCCCGACAGC GCCTCTGTCG ATGCCATCCT TCGACGCGCG
GCGTCGGCGG GTCTGATGAT TGACGCAACA CCGGCGACCG AGGCATATAA TAGGTCGCTC
CCGTTATTGC GCGACCCGTC GGGCCATGGC GTGGCGCTCG ACGTCGGCGT TGTCGTGTAA
|
|---|
| Protein sequence | MTNNNASGTI PPETTIGTVH LTVADLKRAC AFYTETIGFQ AMRRTHQSAI LGVSERPLLL
LTELPGARRA RGVTGLYHFA ILLPSRRDLA ITLAHLLELR TPLQGASDHA VSEAIYLADP
DGNGIEIYRD RPRTEWPRAG SQVRMTVDPF DADGVLGELN RVPATWSGLP AGTIIGHIHL
HVAHLAPARW FYCDVLGFAF MQRFGSSAEF VAAGGYHHHI GYNVWAGIGA PPSSPNMAGL
RWFTLRLPDS ASVDAILRRA ASAGLMIDAT PATEAYNRSL PLLRDPSGHG VALDVGVVV
|
|---|
| |