| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2269 |
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| Symbol | |
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| ID | 5539750 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 2921420 |
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| End bp | 2924032 |
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| Gene Length | 2613 bp |
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| Protein Length | 870 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640894402 |
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| Product | helicase |
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| Protein accession | YP_001432370 |
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| Protein GI | 156742241 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1205] Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0574539 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0000167796 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGGTTCTCA GTTCTCGGTT CTCACACGTG CAAAGCATCA GCGACATCAT TCAGGCGATT
GCGCGGCAAC GCGGACGGGG CGACTCAACC CCATTGATCA TGCTGCGCAC GCTGGACGAC
ATGCCCGGCG AGCGCATCAG CCATCTGCCG ATCGACCCAC AACTGGTGCA GGTTTGGCTC
GCGTACACCG GGGAACCATT TCGCCCACAC CAGGCACACG CGCTGGCGGC GCTGCGACGC
GGCGAGCCGG TGGCGTTGCG CGCGGTATCC GGTGATATTG GGGCAACGTT GCACCTGCTG
GCGCGCGCGG CGCTTGCCGA GGCGCACGGC GCAACCACCT TAATGCTGGC GTTTGATGAC
AGCCACGCGC GCGCGCTGTA CGCAGCATTT GATGATGCCA ATCAGTCGTT GCCGCGCCCA
CTTCAGGTTC CGGCAACGTC CACCACAGCG CTGCGCGTCA ACCCCTTTGC ACGAATGGTC
ATTGCAACGC CTGAGGCGCT GCATGATCGG GTACTGCGTC ATCATCAGCG CGCCTGGAGC
GCCTTCTGGA ACGGATTACG CCTGATCGTG CTCCCGGATG TGCACCGGTT TACCGGCGTC
GCCGGCGCGC ACCTCGCCGA TCTGCTCATG CGCGCCTATC GCGTTGCGGC GGCGCATGGC
GCTGCGCCCG GCTTTTTGGC GTCATTGATG CGATTGAACG ATCCTGCGCC TGCGTTGCAC
GCACTACTCG GCCGGTCCTG GCGCGTCATC GATGCCGACG ATGGACCGCG CCCGGCGACA
GTTGCGGCGA TCTGGCAGGG AGGCGGCGCC TGGCTGCGCG AAACCATCGA ACTGGTCACG
CAGTGGCGGC GGCAGTCGTA CCGGGTACAT GTGCTGTGCG ATGCGCTCGT GCGCGTGGCG
CTTGCGGCTG CCATTGGCGA CTCAGCGGAT GTCACGGTCG GTTCCGACCT GCAACCGGCG
CAGGTGCTCG TCTGCGCCGG TTTTCCCGGT TCGATCAGCG CCTTCCGGCG TCTGCTGGCG
TCCGGGTATC AGGCAGTGAT CGTCGTGCTT GGCGAGTTGC CGCAGGAACA GGCGCTGGCA
CGGCAGGTGT CCGTCGTACT CGACGGACCA CTGACCGCCT GGGTTCCGCC GCCGGCAAAC
GTCTACGTGC TGGCGCAACA CGTCGCGTGC GCCGCCAGTG AACTGCCGCT GACCGCCGCC
GATGTCGATG CCTGGGGATG TGCGGAGATC GTTGCGCGGA TGGCAGCACA TCAGCAGTTG
ATCGAACTCC CTGGCGATGA GTCGATCTGG ATCCCGGCAG GCGAGTACGA TCCGTATGCA
GAGTTCAGTG TGCTGGCAGC CAGCGGCGGT GCGATTACCG CGCGCTCGGA ACAACCGCGC
ATTCGCGAAT GTCTCGACCC AACCCTTTTT GAACGCTGGG CATTTGCGGG CGCCGCGCTG
CCGCCGGGAG TCGGCGGGCT GCGCGTGGTG ATGCGCGATG AAGAAGAGGG GAGCATCTCG
TTGCGTTTGG AAACGAGTGG ACGACGCACC TATCCGCTGC GTCGCGGGCA AGTCGTTATC
CGCGATCTCC ACGAGGAGCG CGCGATGACC CAAGATCAGC GGATGCTATG GGGGCGGGTC
GTGGCGCACG AGACGATCTA CGGTTGGCGC GAGTTGTCGC CTGGCGCATC TCCCGTTGAC
ACGGCGCTCA ATGCGCCGCA CGAAAGCCGC TGGATCGCAC CCGCTTGCTG GTTCGAACTA
CCGGTCGCGA TCCAGGTGCA GGGGCAATTT GTCGGGTGGT GCCTGACGGC AGCGGTCGCG
CTGCGCGCCC TGGCGTCGTT CACCGATCTC GTGCCGTTCT ACGACCACGA ACGACGGCGA
TTGTTTTTCG TCGATGCGCA ACCGGGTGGA AACGGTCTGG CGCAGTGGCT CTACCAGAAC
GCCGAGGATG TGTTGCCCAT CGCCTACGAT GTAGCGCTGG CATGTCGCGC CGACCCGCTG
CTCGAACCGT TGAGCCGCGT CGAGCAGGAC TGGTTGCTCG CCCTGCTCGG TCGGGCGCCC
GTTGAAACGC CACGCCGCAA CGCATCACCG GCGCCGTCAC CGCCAGATCC GCAGAGCGAA
CGGCGCCGGA CCGTCGGATC GTCGTGTGAC CCCCAATTAT CCGCCACGCG CCGGGATCGG
CGCCAACCGT TCCCATCCCC CGAACCGCCG CTAGCGCCGC GCGCTGAACC GGCGCAGCCT
GCGCCCGACG AGCGGAAATC GATGCAGCGC ATCGCGCCGT CGGCGCCGGA AACAACCGAA
CCATCACAGC CAAACGCTGT ACAGAACGAC GAGCGCAGCG AAGCGCCCGA CGCCGCAGCG
CTGATCGAAC GGTTACGACG GCAGCGCGAG CAGCGTGAGC GGGTAAAGGG GCGCGTTACC
CGTGCGACGT CGGCGCGCGA AACGGAAGTG CAACCGCGAT TTGTCCCTGG CGACCGCATT
TTCTGCCTGC CCTACGGTGA CGGTGAGGTG CTCGACAGCC GCATCGAAGA TGATCGAGAA
ATGCTGACGG TCCGTTTCCC CGACTATGGC GAATTGGTGA TCGACCCGGC GCTCAGCCTG
GTGCGCAAAC TCGAACCGCC GCGTGAGAAC TGA
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| Protein sequence | MVLSSRFSHV QSISDIIQAI ARQRGRGDST PLIMLRTLDD MPGERISHLP IDPQLVQVWL
AYTGEPFRPH QAHALAALRR GEPVALRAVS GDIGATLHLL ARAALAEAHG ATTLMLAFDD
SHARALYAAF DDANQSLPRP LQVPATSTTA LRVNPFARMV IATPEALHDR VLRHHQRAWS
AFWNGLRLIV LPDVHRFTGV AGAHLADLLM RAYRVAAAHG AAPGFLASLM RLNDPAPALH
ALLGRSWRVI DADDGPRPAT VAAIWQGGGA WLRETIELVT QWRRQSYRVH VLCDALVRVA
LAAAIGDSAD VTVGSDLQPA QVLVCAGFPG SISAFRRLLA SGYQAVIVVL GELPQEQALA
RQVSVVLDGP LTAWVPPPAN VYVLAQHVAC AASELPLTAA DVDAWGCAEI VARMAAHQQL
IELPGDESIW IPAGEYDPYA EFSVLAASGG AITARSEQPR IRECLDPTLF ERWAFAGAAL
PPGVGGLRVV MRDEEEGSIS LRLETSGRRT YPLRRGQVVI RDLHEERAMT QDQRMLWGRV
VAHETIYGWR ELSPGASPVD TALNAPHESR WIAPACWFEL PVAIQVQGQF VGWCLTAAVA
LRALASFTDL VPFYDHERRR LFFVDAQPGG NGLAQWLYQN AEDVLPIAYD VALACRADPL
LEPLSRVEQD WLLALLGRAP VETPRRNASP APSPPDPQSE RRRTVGSSCD PQLSATRRDR
RQPFPSPEPP LAPRAEPAQP APDERKSMQR IAPSAPETTE PSQPNAVQND ERSEAPDAAA
LIERLRRQRE QRERVKGRVT RATSARETEV QPRFVPGDRI FCLPYGDGEV LDSRIEDDRE
MLTVRFPDYG ELVIDPALSL VRKLEPPREN
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