Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2254 |
Symbol | |
ID | 5539735 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 2905400 |
End bp | 2906620 |
Gene Length | 1221 bp |
Protein Length | 406 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640894387 |
Product | PSP1 domain-containing protein |
Protein accession | YP_001432355 |
Protein GI | 156742226 |
COG category | [S] Function unknown |
COG ID | [COG1774] Uncharacterized homolog of PSP1 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0152861 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCGTTG TGGTTGGCAT TCGATTCAAG GACTCCGGCA AAACATACTA TTTCGATCCG AATGGTCTGG AATCTTTGGC GCAGGGCGAT TATGTGATCG TCGAGACGGT GCGCGGACCG GAAATGGCCA AGGTCGCCCA CCCGCCGCGT CTGGTCGATC CGGAAGTGAT TGTCGGTGAA CTGAAGCCGG TGCTGCGTCG CGCTGAACTG GCTGACTTCG AGCGCCTGCG CCAGTTGAAC AGTCGCCAGG ATGAAGTACT CGCCCGTTGC GCTGAAAAGG TACAGGAGCA CGGCTTGCCT ATGCGCCTGG TGAAGGCGGA GTATTCGTTC GATGGCTCGC GGCTGACGTT CTACTTCACC GCCGAAAAAC GGGTGGACTT CCGCGCTCTT GTGCGCGATC TGGCGCGCAC CTTCCGCACG CGCATCGAAC TGCGCCAGAT TGGTCCGCGT GATGAGGCGA AACTCCTTGG CGGGATCGGT CCATGCGGTC GCCTGCTCTG CTGCGCGACA TTCCTTCCCG ATTATGCGCG GGTCTCGATC AAGATGGCAA AAGACCAGGA CCTGCCGCTC AATCCGACCA AGATCAGCGG CGTATGCGGT CGCCTGCTCT GCTGCCTTTC GTATGAACAT GAACAGTATG TGGCGGTCAA GAGCCGGATG CCGCGCAAAG GCGCATGGGT GCAGACGCCC GACGGTCCGG GGGAGGTGGT CGGGGTCAAT GTTCTGCGCG AGACGGTCAT CGTTGCGCTT GCCAGCACCG GTTTGCAGGA GGAGTTCTTG CCGGCGCACA TCCAGGAAGC GACCCGCCAC GTCGGTGATG TGGCGCGCAG CCGCAACGCC GAGGGGATTA CGCCAGCCGC CAGAATGCGC GCCGAACGCC AGGAGCGTCG TGCCGACCAG GGACGTCCGA GCGAAAAACG GTTGCTGCGC GACTCGATCA ACAATCCTGA TGTTCTCGAG GCGCTGGCGT GGCTCGAAGA AGGCGTTGAG GATGCGCCGC TCGACTTGCT TGATGAGGAA GCGCTCAATC TGATCTCCGA CGATCAACCA GCCCCGCGTT CCTCATCGGG TCGACCAACC GCTGAGCAGC ACGCGAAGCG ACCGCCTGAT CGCGCGGATG ATCTTGCCGC ATTCCTCAGC CAAGAAACGC CCCAATCACC CGATCCATCG AAGCCTGCAT CGCCGCAGCG CCCACGGCGA CGACGGCGGC GCAATACCTG A
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Protein sequence | MPVVVGIRFK DSGKTYYFDP NGLESLAQGD YVIVETVRGP EMAKVAHPPR LVDPEVIVGE LKPVLRRAEL ADFERLRQLN SRQDEVLARC AEKVQEHGLP MRLVKAEYSF DGSRLTFYFT AEKRVDFRAL VRDLARTFRT RIELRQIGPR DEAKLLGGIG PCGRLLCCAT FLPDYARVSI KMAKDQDLPL NPTKISGVCG RLLCCLSYEH EQYVAVKSRM PRKGAWVQTP DGPGEVVGVN VLRETVIVAL ASTGLQEEFL PAHIQEATRH VGDVARSRNA EGITPAARMR AERQERRADQ GRPSEKRLLR DSINNPDVLE ALAWLEEGVE DAPLDLLDEE ALNLISDDQP APRSSSGRPT AEQHAKRPPD RADDLAAFLS QETPQSPDPS KPASPQRPRR RRRRNT
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