Gene Rcas_2254 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2254 
Symbol 
ID5539735 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp2905400 
End bp2906620 
Gene Length1221 bp 
Protein Length406 aa 
Translation table11 
GC content62% 
IMG OID640894387 
ProductPSP1 domain-containing protein 
Protein accessionYP_001432355 
Protein GI156742226 
COG category[S] Function unknown 
COG ID[COG1774] Uncharacterized homolog of PSP1 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0152861 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGTTG TGGTTGGCAT TCGATTCAAG GACTCCGGCA AAACATACTA TTTCGATCCG 
AATGGTCTGG AATCTTTGGC GCAGGGCGAT TATGTGATCG TCGAGACGGT GCGCGGACCG
GAAATGGCCA AGGTCGCCCA CCCGCCGCGT CTGGTCGATC CGGAAGTGAT TGTCGGTGAA
CTGAAGCCGG TGCTGCGTCG CGCTGAACTG GCTGACTTCG AGCGCCTGCG CCAGTTGAAC
AGTCGCCAGG ATGAAGTACT CGCCCGTTGC GCTGAAAAGG TACAGGAGCA CGGCTTGCCT
ATGCGCCTGG TGAAGGCGGA GTATTCGTTC GATGGCTCGC GGCTGACGTT CTACTTCACC
GCCGAAAAAC GGGTGGACTT CCGCGCTCTT GTGCGCGATC TGGCGCGCAC CTTCCGCACG
CGCATCGAAC TGCGCCAGAT TGGTCCGCGT GATGAGGCGA AACTCCTTGG CGGGATCGGT
CCATGCGGTC GCCTGCTCTG CTGCGCGACA TTCCTTCCCG ATTATGCGCG GGTCTCGATC
AAGATGGCAA AAGACCAGGA CCTGCCGCTC AATCCGACCA AGATCAGCGG CGTATGCGGT
CGCCTGCTCT GCTGCCTTTC GTATGAACAT GAACAGTATG TGGCGGTCAA GAGCCGGATG
CCGCGCAAAG GCGCATGGGT GCAGACGCCC GACGGTCCGG GGGAGGTGGT CGGGGTCAAT
GTTCTGCGCG AGACGGTCAT CGTTGCGCTT GCCAGCACCG GTTTGCAGGA GGAGTTCTTG
CCGGCGCACA TCCAGGAAGC GACCCGCCAC GTCGGTGATG TGGCGCGCAG CCGCAACGCC
GAGGGGATTA CGCCAGCCGC CAGAATGCGC GCCGAACGCC AGGAGCGTCG TGCCGACCAG
GGACGTCCGA GCGAAAAACG GTTGCTGCGC GACTCGATCA ACAATCCTGA TGTTCTCGAG
GCGCTGGCGT GGCTCGAAGA AGGCGTTGAG GATGCGCCGC TCGACTTGCT TGATGAGGAA
GCGCTCAATC TGATCTCCGA CGATCAACCA GCCCCGCGTT CCTCATCGGG TCGACCAACC
GCTGAGCAGC ACGCGAAGCG ACCGCCTGAT CGCGCGGATG ATCTTGCCGC ATTCCTCAGC
CAAGAAACGC CCCAATCACC CGATCCATCG AAGCCTGCAT CGCCGCAGCG CCCACGGCGA
CGACGGCGGC GCAATACCTG A
 
Protein sequence
MPVVVGIRFK DSGKTYYFDP NGLESLAQGD YVIVETVRGP EMAKVAHPPR LVDPEVIVGE 
LKPVLRRAEL ADFERLRQLN SRQDEVLARC AEKVQEHGLP MRLVKAEYSF DGSRLTFYFT
AEKRVDFRAL VRDLARTFRT RIELRQIGPR DEAKLLGGIG PCGRLLCCAT FLPDYARVSI
KMAKDQDLPL NPTKISGVCG RLLCCLSYEH EQYVAVKSRM PRKGAWVQTP DGPGEVVGVN
VLRETVIVAL ASTGLQEEFL PAHIQEATRH VGDVARSRNA EGITPAARMR AERQERRADQ
GRPSEKRLLR DSINNPDVLE ALAWLEEGVE DAPLDLLDEE ALNLISDDQP APRSSSGRPT
AEQHAKRPPD RADDLAAFLS QETPQSPDPS KPASPQRPRR RRRRNT