Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2237 |
Symbol | |
ID | 5539718 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 2884591 |
End bp | 2885271 |
Gene Length | 681 bp |
Protein Length | 226 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 640894370 |
Product | restriction endonuclease EcoRV |
Protein accession | YP_001432338 |
Protein GI | 156742209 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000657606 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0000585115 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGATAAAA ACAATTTTTT GGATGCGCTT CAGAAAGAAG TAGATACGTT TAATTCGGCG TTTTCCACTC CAAATGGTGA CTGGATTATC AAGGGGTTTA TTGACATAGC CAAGAACATT TACACCATTT CGGCAGACAC AAAAGTTATC TCAAAAATCA TGGAACTTTT GTTGTTCCCA GAGCTTGCGC ACTTCGCAGA AAAGCATGGC TTGAAAATGG TCTTATCGGA ACAGCAGAAC TTTTATCCAG ACATAAGTTT TGTAGATGAT GATGGTCACC GTTTTGCACT TGACTTGAAG AGTACTTACA GAGTTGATAG TAGCCGCGTG AATGGTATGA CACTCGGGGC TTTTACTGGA TACTTCCGAG AAAGGAATAG CACAAAGAAC ATAACTTTTC CCTACGTTTC TTATAGCGGA CACTTTGTTC TGGGTGTGAT TTATTCAAAG ACTGATGACT TGATTGACGA GCGAAGAAGA TACACTCTCG ATGAACTTGA GCGGATTACA TCTGTCATCA GAGACTTTCA GTTCTTTGCT CAAGAAAAAT ATCGCATTGC GTCTGACCGT CCAGGGAGTG GCAATACCAA GAATATTGGT TCAGTCACAG AGATTGATAC GCTTGTAAAT GGATCTGGCT CGTTTGCTTC GTTAGGAGAA GATGTTTTTG ATGACTACTG A
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Protein sequence | MDKNNFLDAL QKEVDTFNSA FSTPNGDWII KGFIDIAKNI YTISADTKVI SKIMELLLFP ELAHFAEKHG LKMVLSEQQN FYPDISFVDD DGHRFALDLK STYRVDSSRV NGMTLGAFTG YFRERNSTKN ITFPYVSYSG HFVLGVIYSK TDDLIDERRR YTLDELERIT SVIRDFQFFA QEKYRIASDR PGSGNTKNIG SVTEIDTLVN GSGSFASLGE DVFDDY
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