| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2214 |
|---|
| Symbol | |
|---|
| ID | 5539695 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 2859929 |
|---|
| End bp | 2861113 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640894347 |
|---|
| Product | DNA replication and repair protein RecF |
|---|
| Protein accession | YP_001432315 |
|---|
| Protein GI | 156742186 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1195] Recombinational DNA repair ATPase (RecF pathway) |
|---|
| TIGRFAM ID | [TIGR00611] recF protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00444262 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTATGTGA CGCACCTCAG TCTGCGTGAT TTTCGCAATT ACGAACGGCT CGATCTGAAC
CTCGAACCGG GAGTGACCCT GCTCTACGGT CCTAACGCGG CAGGCAAAAC GACGGTGCTG
GAGGCGATCT ATTTTCTGGC GACCACCCGT TCGCCGCGCG CCGGCGCCGA TCGCGAACTG
GTGCGCTTCG AGGCGCAGGG CGATCTTGGC GTGCCGCCGT TTGCCCGCCT GGTGTGCGAT
GTTGTGCGCG CCGATGGGTA TGTGCGGCTC GAGGTCGTTG TGCAGCGCCG CGCCGAGGAG
GAGTCTGCAA TCGGCGCGAC GCCGACCATC AAGACAGTGC GGATCGACCG GAAAGCGGTG
CGCGCGCTCG ACCTGGTGGG GAACCTGCGT GTGGTTCTGT TCACTCCCGC CGATATTGCG
CTGGTAACCG GCGCGCCGGC TGAACGACGC CGCTACCTGG ATGTAACCCT CTCGCAGATC
GACGGGCGTT ATGTGCGGAC CCTGGCGCAT TATCAGAAGG TCGTGCAGCA GCGCAACAGT
CTGCTGCGCG CCTGGCGTGA GGGGCGGCGT CCATTGCGCT ATGCCGACGA TGAACTGGCG
TTCTGGGACC GGGAACTGGC AATGGCGGGC GCGTATCTGC TGCGCGAACG GCTACACGCC
GTCGTTGACC TCAACGCCCT GGCAGGACCA CTCTATTGCC GGATGTCGGG CGGTGACACG
CCACTGACCC TTGCCTATCA GAGCAGCGTT GCGGGTATTG ATTCGGTTAC CGACAGCCGC
GCTATCGAGC AGGCATTTCT GGCACACCTG ACACGCCTGC GCGACGACGA GATCGGGCGT
GGGCAAACGC TGATCGGGCC ACACCGCGAC GATCTGCTGA TCGCGGTTGG CGGCGTCCCC
ATTGGCGCGT ATGGTTCACG CGGACAACAA CGCAGCGCCA CACTGTCGCT CAAACTCGGC
GAAGCAAAAC TGATGCGAAT ACGCACCGGT GACGCGCCGG TGTTGCTCCT CGACGATCTG
CTCTCCGAAT TGGACGCCGA ACGACGATCG CACGTGCAGG ATATTCTGGA ACGTCCCGAC
CAGCAAACGA TCGTGACTGC CACCGGAACC GACGACTTCG ACCTGAAGTT CCTCACGCGC
GCGCGTCGCT GGCGCGTCGA AAGCGGGCAT TTGTATCCGG CGTGA
|
|---|
| Protein sequence | MYVTHLSLRD FRNYERLDLN LEPGVTLLYG PNAAGKTTVL EAIYFLATTR SPRAGADREL
VRFEAQGDLG VPPFARLVCD VVRADGYVRL EVVVQRRAEE ESAIGATPTI KTVRIDRKAV
RALDLVGNLR VVLFTPADIA LVTGAPAERR RYLDVTLSQI DGRYVRTLAH YQKVVQQRNS
LLRAWREGRR PLRYADDELA FWDRELAMAG AYLLRERLHA VVDLNALAGP LYCRMSGGDT
PLTLAYQSSV AGIDSVTDSR AIEQAFLAHL TRLRDDEIGR GQTLIGPHRD DLLIAVGGVP
IGAYGSRGQQ RSATLSLKLG EAKLMRIRTG DAPVLLLDDL LSELDAERRS HVQDILERPD
QQTIVTATGT DDFDLKFLTR ARRWRVESGH LYPA
|
|---|
| |