Gene Rcas_2213 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2213 
Symbol 
ID5539694 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp2858349 
End bp2859452 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content63% 
IMG OID640894346 
Productradical SAM domain-containing protein 
Protein accessionYP_001432314 
Protein GI156742185 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1180] Pyruvate-formate lyase-activating enzyme 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0100129 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGAAC GCACCTTCCT TGAGCCTGGC GTCGTTCTCG GCGAGTGGTG GCATCGCACC 
GCCGATGGCC GGTTTCAGTG CGATCTCTGT CCGCGCGGCT GCACGCTGCG CCCTGGTCAG
CACGGCTTCT GCTTTGTGCG CGAGGCGCGC AATGAAGGGA TCGTCCTTTC CTCCTACGGT
CGCGCGTCCG GTTTCTGCGC CGACCCGATC GAGAAGAAGC CGCTCTTCCA TTTTTTCCCC
GGTACGGGGG TCTTTTCCTT TGGTACTGCC GGGTGCAACC TGGGGTGCCG TTTCTGCCAG
AACTGGTCGA TCTCCAAAGC GCGCGAGATG GCGCTGCTCG ACGCGCGCGC GACGCCGGAG
GAGGTTGCAG AAGCGGCGCT AGCAGTAGGG TGTCGCAGCG TCGCTTTTAC CTACAACGAT
CCGGTCATTT TTGCCGAGTA TGCCATTGAT TGCGCGCGCG CTGCGCGCGA ACGCGGTCTG
GCAACCGTCG TTGTGTCGGC GGGGTACATT TCGCCGCAGG CGCGGCCCGC TTTCTTTGCG
CACATCGATG CCGCAAACAT CGATCTCAAA GGGTTCAGCG AGGAATTTTA CCGGAAATTG
TGCCTCGGCT CGCTGGCGCC GGTGCTCGAC ACGCTCCGCT GGCTGCGCCG TGAGACCAAT
GTCTGGCTGG AAGTAACCAA TCTGATCATT CCCGGCGCCA ATGACTCGCC AGACGATGTT
GCGCGCCTGT GCGATTGGTT CGTGAATGAA CTCGGTCCTG ATGTGCCGTT GCACTTTACG
GCGTTCCATC CCGATTATCG TATGCTCGAT ACGCCGCCAA CCCCGCCCGC GACGCTGAAA
CGCGCTCGCG AACAGGCGCT TGCCGCCGGT CTGCGCTATG TGTATACCGG GAATGTCTAC
GACGCTGCCG GGCAGTCGAC GTACTGCGCC GGTTGCGGCG CGCGTGTCAT CGAGCGCGAC
TGGCATCGCC TGAAACGCTG GCGACTTGAC GCCGCCGGTC GATGTGTGCG CTGCGGTCAT
CCGCTGCCGG GACGGTTCGA TGCTGCGCCG GGGCGCTGGA ACGGACGGAT GGCGCCGGTG
CGGATTGTGG AGTCACTCGC GTGA
 
Protein sequence
MNERTFLEPG VVLGEWWHRT ADGRFQCDLC PRGCTLRPGQ HGFCFVREAR NEGIVLSSYG 
RASGFCADPI EKKPLFHFFP GTGVFSFGTA GCNLGCRFCQ NWSISKAREM ALLDARATPE
EVAEAALAVG CRSVAFTYND PVIFAEYAID CARAARERGL ATVVVSAGYI SPQARPAFFA
HIDAANIDLK GFSEEFYRKL CLGSLAPVLD TLRWLRRETN VWLEVTNLII PGANDSPDDV
ARLCDWFVNE LGPDVPLHFT AFHPDYRMLD TPPTPPATLK RAREQALAAG LRYVYTGNVY
DAAGQSTYCA GCGARVIERD WHRLKRWRLD AAGRCVRCGH PLPGRFDAAP GRWNGRMAPV
RIVESLA