Gene Rcas_2209 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2209 
Symbol 
ID5539690 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp2852690 
End bp2853955 
Gene Length1266 bp 
Protein Length421 aa 
Translation table11 
GC content65% 
IMG OID640894342 
Productglycosyl transferase group 1 
Protein accessionYP_001432310 
Protein GI156742181 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0438] Glycosyltransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0688071 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCATTG CAATGCTCAG CGTTCATAGC AGCCCCCTCG CGCGTCTCGG AGGCAAGGAG 
GCGGGTGGCA TGAATGTGTA TGTTCGAGAA TTGAGCCGCG AGTTCGGACG GCGCGGCATT
TCGGTCGATA TTTTCACCCG CGCGCAGGAA CGCACCGCGC CGGCGATCGT TCCGATCGAT
CAGGGGGTGC GACTGATCCA CGTGCGCGCC GGTCCATCAG CCCCCTACGA CAAAAATCGT
CTGCTGGACT ATTTGCCGGA GTTTATTGGG CGGGTGCGCT GCTTCGCCGA TAGTGAAGAC
CTGCACTACG ACATCATCCA CAGTCATTAC TGGGTCTCCG GCGAAGCGGC GCTGGCGCTG
CGCCGCAGTT GGGGCGCGCC TGTCGTGCAT ATGTTCCATA CCCTTGGCGC AATGAAAAAC
CAGGTGGCGC GCGGGTCAGA AGAACGCGAG ACCAGGCAGC GAGTCGCTGT CGAGGGAGGC
ATTCTGCGCG AGGCTGATAT GATCATTGCA GCAACGCCGC TCGACCGGGC GCAGATGGTC
TGGCACTATA ACGCGGACGC AGAGAAGATC AGGGTTGTGC CGGCCGGTGT TGACCTGCGC
CGCTTTCGAC CCCGCGATCT CGTGGAGGCG CGCGCGGCGC TCGATCTGCC GCCTCCCCCA
CACCGCGTCG TCCTGCTGGT GGCGCGTATT GAGCCGCTCA AGGGGATCGA CGCGCTGATC
GAAGCCGGCG CGCTGCTGCT GCAACGCCAC CCTGCGTGGT GCGGCGCGCT GACGACGCTG
ATCGTCGGCG GCGGCGGCGA AGAGGAACGC GCGCAATGGA ACGCCGAGCA ACGGCGATTG
GACGCGCTGC GCCAGCGGCT CGACATCGCC GATGTCGTTC ACTTCGCCGG AGCGCAACCG
CAGGATCGTC TGCCGCTGTA CTATGCTGCC GCCGATGTTG TGACCATGCC GTCGCACTAT
GAGTCGTTCG GAATGGCGGC GCTCGAAGCG CTGGCATGCG GCAGGCCGGT TATCGCCACG
AATGCGGGAG GTCCGGCGTT CATTGTGGAA GATGGCGTGA GCGGGTTGTT GACCCCGCCA
GCCGATCCGG TGACGCTGGC GCGGCATCTT GAGCGCCTGC TGCGGGACGA TGCCGGGCGT
GCCGCTATGG GCGCTGCGGC GCGCGAACGC GCGTTGCGGT TCGGCTGGGA ACACGTCGCC
TGCGATATTC TTAGCGTCTA TCGTGATCTC CTCCGGCAGC GCAGCGCATG GATGCGCGCA
GGGTAA
 
Protein sequence
MRIAMLSVHS SPLARLGGKE AGGMNVYVRE LSREFGRRGI SVDIFTRAQE RTAPAIVPID 
QGVRLIHVRA GPSAPYDKNR LLDYLPEFIG RVRCFADSED LHYDIIHSHY WVSGEAALAL
RRSWGAPVVH MFHTLGAMKN QVARGSEERE TRQRVAVEGG ILREADMIIA ATPLDRAQMV
WHYNADAEKI RVVPAGVDLR RFRPRDLVEA RAALDLPPPP HRVVLLVARI EPLKGIDALI
EAGALLLQRH PAWCGALTTL IVGGGGEEER AQWNAEQRRL DALRQRLDIA DVVHFAGAQP
QDRLPLYYAA ADVVTMPSHY ESFGMAALEA LACGRPVIAT NAGGPAFIVE DGVSGLLTPP
ADPVTLARHL ERLLRDDAGR AAMGAAARER ALRFGWEHVA CDILSVYRDL LRQRSAWMRA
G