Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2208 |
Symbol | |
ID | 5539689 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 2850458 |
End bp | 2851786 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640894341 |
Product | Serine-type D-Ala-D-Ala carboxypeptidase |
Protein accession | YP_001432309 |
Protein GI | 156742180 |
COG category | [V] Defense mechanisms |
COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.474098 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.561482 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAACCCG TGTACTCTCA ATCCCGCAAT CGTCGCCGAC GGCGACATCA CGCACAGCGT GCCGCAACGC CGGTGTGGCG CGCGGTTGCC ATTGCCGCAG GCGCCCTGCT CATTGTGCTC GGCACGTGCA GCGCGCCGTT CATAACACGC CGGATGCAGC AAGAAGCCGC CCCGCCCCCA ACCCCGCTTC CGGCAGCGGT CGCACCTGCG CCCACAGTTG CCGCTTCAGC AACGCCGCGC CCAACACAGA TCCCGCAGCC ATCGGCGACG CCGGCGCCAC CGCCAACGCC AACCCTGATG GCGGGGGCGG GTCCCGGCGC GCCGCCGCTC AGCCCGCTCG GACGCGAGAT CGATGCCTAC CTGAGCGGAC TGACGAGCAG CGGACAGTTT CAGGGCGCCG TGCTCGTCGC CCAAAACGGC GAGGTGGTCA TTGCACGGGG GTACGGTAAT GCCGATGATA ACGTCCCCAA CACCGTGCAG ACCCGCTTCC GACTTGCGTC GGTCACCAAA CAGTTCACTG CCGCCGCTAT TCTTGCGTTG CAGCAGGATG GCAAATTGAC CGTCGATGAC GCTATCTGCG CCTATCTCGA TCCCTGCCCT GACGCCTGGA AGCCGCTGAC GATTCGCCAT CTGCTGACGC ATACTTCCGG GCTCGTGGAC TATACCGCCT TCGCCGGGTT CGAGCCGACC GAAATGAACC CGGCAACGCC ACAGGAACTG GTCGAGCGAT TCCGGGATTT CCCGCTCAGT TTTGCGCCAG GCACGCTTTA CCACTACTGC AATTCGAACT ATGTGCTGCT CGGATTGATC ATCGAGCGCG TGTCGGGCAT GGAGTACGCC GATTATCTGG AGCAACGCTT CTTCGTTCCG CTCGGCATGA CGAATACCGG CTATGATACC AGTCGCGGCA CAATCATCGA CGGCGCGCAG GGGTATGTCA CACCCGGCAG GAAATCCGGC TTCCTCGACG CCTCCACTCT CTACGCCGCC GGAGGGTTGT ACTCGACCGT CGGCGATCTC TTTCGCTGGG ATCAGGCGCT CTCTACCGAA GAGGCGCTTA CGCGCACCCA ACTGGAGCAG ATGTTTACTC CGGCGCTGCG CAATTACGGT TTTGGCTGGA AGATCGAAAC CATCGATGGA CGACGGCGCA TCAGTCATCC CGGTAATATG ACCGGCGTCG CCACCTTCTT TGCCCGCTAC CCCGACGACC GCGCGACGAT CATCGTGCTG GCAAATATGG AGTACGCCAA CGCCGAAGGG ATTGCCAACT ATGTTGCATC GCGCATGTTT GCGCCAGCGG CGACCACAAC CCCGCCAACC ACGCGGTAA
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Protein sequence | MQPVYSQSRN RRRRRHHAQR AATPVWRAVA IAAGALLIVL GTCSAPFITR RMQQEAAPPP TPLPAAVAPA PTVAASATPR PTQIPQPSAT PAPPPTPTLM AGAGPGAPPL SPLGREIDAY LSGLTSSGQF QGAVLVAQNG EVVIARGYGN ADDNVPNTVQ TRFRLASVTK QFTAAAILAL QQDGKLTVDD AICAYLDPCP DAWKPLTIRH LLTHTSGLVD YTAFAGFEPT EMNPATPQEL VERFRDFPLS FAPGTLYHYC NSNYVLLGLI IERVSGMEYA DYLEQRFFVP LGMTNTGYDT SRGTIIDGAQ GYVTPGRKSG FLDASTLYAA GGLYSTVGDL FRWDQALSTE EALTRTQLEQ MFTPALRNYG FGWKIETIDG RRRISHPGNM TGVATFFARY PDDRATIIVL ANMEYANAEG IANYVASRMF APAATTTPPT TR
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