Gene Rcas_2208 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2208 
Symbol 
ID5539689 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp2850458 
End bp2851786 
Gene Length1329 bp 
Protein Length442 aa 
Translation table11 
GC content63% 
IMG OID640894341 
ProductSerine-type D-Ala-D-Ala carboxypeptidase 
Protein accessionYP_001432309 
Protein GI156742180 
COG category[V] Defense mechanisms 
COG ID[COG1680] Beta-lactamase class C and other penicillin binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.474098 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.561482 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACCCG TGTACTCTCA ATCCCGCAAT CGTCGCCGAC GGCGACATCA CGCACAGCGT 
GCCGCAACGC CGGTGTGGCG CGCGGTTGCC ATTGCCGCAG GCGCCCTGCT CATTGTGCTC
GGCACGTGCA GCGCGCCGTT CATAACACGC CGGATGCAGC AAGAAGCCGC CCCGCCCCCA
ACCCCGCTTC CGGCAGCGGT CGCACCTGCG CCCACAGTTG CCGCTTCAGC AACGCCGCGC
CCAACACAGA TCCCGCAGCC ATCGGCGACG CCGGCGCCAC CGCCAACGCC AACCCTGATG
GCGGGGGCGG GTCCCGGCGC GCCGCCGCTC AGCCCGCTCG GACGCGAGAT CGATGCCTAC
CTGAGCGGAC TGACGAGCAG CGGACAGTTT CAGGGCGCCG TGCTCGTCGC CCAAAACGGC
GAGGTGGTCA TTGCACGGGG GTACGGTAAT GCCGATGATA ACGTCCCCAA CACCGTGCAG
ACCCGCTTCC GACTTGCGTC GGTCACCAAA CAGTTCACTG CCGCCGCTAT TCTTGCGTTG
CAGCAGGATG GCAAATTGAC CGTCGATGAC GCTATCTGCG CCTATCTCGA TCCCTGCCCT
GACGCCTGGA AGCCGCTGAC GATTCGCCAT CTGCTGACGC ATACTTCCGG GCTCGTGGAC
TATACCGCCT TCGCCGGGTT CGAGCCGACC GAAATGAACC CGGCAACGCC ACAGGAACTG
GTCGAGCGAT TCCGGGATTT CCCGCTCAGT TTTGCGCCAG GCACGCTTTA CCACTACTGC
AATTCGAACT ATGTGCTGCT CGGATTGATC ATCGAGCGCG TGTCGGGCAT GGAGTACGCC
GATTATCTGG AGCAACGCTT CTTCGTTCCG CTCGGCATGA CGAATACCGG CTATGATACC
AGTCGCGGCA CAATCATCGA CGGCGCGCAG GGGTATGTCA CACCCGGCAG GAAATCCGGC
TTCCTCGACG CCTCCACTCT CTACGCCGCC GGAGGGTTGT ACTCGACCGT CGGCGATCTC
TTTCGCTGGG ATCAGGCGCT CTCTACCGAA GAGGCGCTTA CGCGCACCCA ACTGGAGCAG
ATGTTTACTC CGGCGCTGCG CAATTACGGT TTTGGCTGGA AGATCGAAAC CATCGATGGA
CGACGGCGCA TCAGTCATCC CGGTAATATG ACCGGCGTCG CCACCTTCTT TGCCCGCTAC
CCCGACGACC GCGCGACGAT CATCGTGCTG GCAAATATGG AGTACGCCAA CGCCGAAGGG
ATTGCCAACT ATGTTGCATC GCGCATGTTT GCGCCAGCGG CGACCACAAC CCCGCCAACC
ACGCGGTAA
 
Protein sequence
MQPVYSQSRN RRRRRHHAQR AATPVWRAVA IAAGALLIVL GTCSAPFITR RMQQEAAPPP 
TPLPAAVAPA PTVAASATPR PTQIPQPSAT PAPPPTPTLM AGAGPGAPPL SPLGREIDAY
LSGLTSSGQF QGAVLVAQNG EVVIARGYGN ADDNVPNTVQ TRFRLASVTK QFTAAAILAL
QQDGKLTVDD AICAYLDPCP DAWKPLTIRH LLTHTSGLVD YTAFAGFEPT EMNPATPQEL
VERFRDFPLS FAPGTLYHYC NSNYVLLGLI IERVSGMEYA DYLEQRFFVP LGMTNTGYDT
SRGTIIDGAQ GYVTPGRKSG FLDASTLYAA GGLYSTVGDL FRWDQALSTE EALTRTQLEQ
MFTPALRNYG FGWKIETIDG RRRISHPGNM TGVATFFARY PDDRATIIVL ANMEYANAEG
IANYVASRMF APAATTTPPT TR