| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2184 |
|---|
| Symbol | |
|---|
| ID | 5539665 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 2805618 |
|---|
| End bp | 2806505 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640894318 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001432286 |
|---|
| Protein GI | 156742157 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0092646 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAC AAATGCTACT TATCGTGACG CTGATCGCCG CCATCCTGGC GATTAGCGCC
TGCGGCGGAG CGCCTGCCGC GCAGCCGACC CAACCCGCCG CGCAGCCGAC CCAACCCGCC
GCGCAGCCGA CCCAACCCGC CGCGCAGCCG ACCCAACCCG CCACGCAACC AGAGGGGAAA
CTGGCGCAGA TCCGGGCAGC CGGCAAACTC ATCGTCGGCA CGTCGGCAGA CTACCCGCCC
TACGAGTCGA TCGACGCCAA TGGCAACTTC GTCGGTTTCG ACATGGACCT CATCCGCGCT
GTCGGCGAAA AACTCGGCGT CCAGGTCGAG ATTCGCGATA TGCCGTTCGA CTCGTTGATC
GCATCGCTCC AGGAAGGCAA GATCGATGCC GTGATCGCCG CCATGCAGGC GACCGCCGAG
CGTGAAGAGA AGGTCGATTT CACCATTCCT TACCGCATGA CGAAAGATGC ATTTATCGGC
GCCGGCGATA CAACAATTGT CATGAGCAAA CCGGAGGATG CGGCGGGAAT GACCATCGGC
GCACAGACCG GTACGGTTCA GGAAGGGTGG ATTCAGAAGA ACCTGGTGGC CACCGGATTA
ACGCCTGCCG ATAAGGTCTT CAGCTATGAG CGCGCCGATC AGGCAGCGCT CGACCTTGCC
AGTGGACGGC TCCAACTGGT GCTGATGGAC GCCGAACCCG CGTTGGAACT TGCCCAAAAG
AATAATCTGA AGGTGCTGCT CGTCACTGAG ACAACCGCCG AGGGCGGCAA GAGCATCGCC
ATCCCTGAAG GCGCCGGTGA CCTCAAGGCG GAACTGGATC GGATCATTCA GGGATTGATC
GATGACGGCA CTGTGAAAGC GCTCGAAGAA AAGCACGGAC TGCCATAA
|
|---|
| Protein sequence | MKKQMLLIVT LIAAILAISA CGGAPAAQPT QPAAQPTQPA AQPTQPAAQP TQPATQPEGK
LAQIRAAGKL IVGTSADYPP YESIDANGNF VGFDMDLIRA VGEKLGVQVE IRDMPFDSLI
ASLQEGKIDA VIAAMQATAE REEKVDFTIP YRMTKDAFIG AGDTTIVMSK PEDAAGMTIG
AQTGTVQEGW IQKNLVATGL TPADKVFSYE RADQAALDLA SGRLQLVLMD AEPALELAQK
NNLKVLLVTE TTAEGGKSIA IPEGAGDLKA ELDRIIQGLI DDGTVKALEE KHGLP
|
|---|
| |