| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2183 |
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| Symbol | |
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| ID | 5539664 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 2804960 |
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| End bp | 2805613 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640894317 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_001432285 |
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| Protein GI | 156742156 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00895829 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCGGACT TGTTTCAGAA TCTGCTCACG ACTTTCAATT TTATCGTGCA GGGACTGTGG
GTGACCATCA GCGTTACAGC AGTTGCACTG ACGGTTGGCG TGGTGGTTGG CATCGTCATG
GCAGTTGCGC GCGTCTATGG TCACCCCGCC CTTCAGATAG TCGTTTCCGC CTATAGTGTC
GCTGTGCGTG CTGTGCCGGT AATTGTTATC ATTTTCCTTC TGTTCTTTGT TATTTCTCGT
TATGTCAATT TATCACCCTT CTGGGCCGGG GCGCTGGCGT TGGGATTCGC ATCGGGAGCG
TATCAGACTG AAATCTTTCG CGGCGCCCTT CAAGCCGTGC AGCCGGGGCA GATGATTGCA
GCGCGGGCGA TCGGCATGAG CCGCTTGCAG GCAATCCAGA GCGTCGTTCT GCCGCAGGCG
CTGCGCCTGG CGCTGCCCGC GTGGGGCAAT GAGGCGACGC TGGTGCTGAA GGATTCAACG
CTGGTGTTCG CTGTCGGCGT GCCGGAGATT CTGCGGCGCG CGCAACAGGT CAGTGCGCGC
ACCTTCGAGC CGTTCCTCGC CTTCGGCGTC GCCCTGCTGC TCTACCTGGC GCTCACGCTC
ATCACAACCC AGGCGCTCCA GTGGCTCGAA CGCCGGTATC GATTGCAGGT GTAG
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| Protein sequence | MADLFQNLLT TFNFIVQGLW VTISVTAVAL TVGVVVGIVM AVARVYGHPA LQIVVSAYSV
AVRAVPVIVI IFLLFFVISR YVNLSPFWAG ALALGFASGA YQTEIFRGAL QAVQPGQMIA
ARAIGMSRLQ AIQSVVLPQA LRLALPAWGN EATLVLKDST LVFAVGVPEI LRRAQQVSAR
TFEPFLAFGV ALLLYLALTL ITTQALQWLE RRYRLQV
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