| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2181 |
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| Symbol | |
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| ID | 5539662 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 2803500 |
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| End bp | 2804174 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640894315 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_001432283 |
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| Protein GI | 156742154 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00979966 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCACGATT TTATCGACCT TCTGAGCAGA GTGACCCCCG ACCTGTTGCA GGGAACCGTC
GTGACTCTTC AGATCGCGGC GATCTCGCTG ATCCTTGGGA TGATCGTCGG GCTGCCGGTC
GGCATCGGGC GCGTTTATGG ACCGGTGTGG CTGCAACGAT TGCTTGGGGC ATACATTACT
CTTTTTCAGG GAACACCCTT GTTGATCCAA CTCTTCACAG TCTACTATGG GCTTCCCGAC
GTCGGCATCA CCCTGGGGCG CCTTCAGGCG GCGTTTCTTA CCCTTGGTCT CAACAGCGCG
GCGTATCAGG CGGAATATCT GCGCAGCGCG CTGCAATCGG TGAGCGAAGG GCAGATGGTT
GCCGCGCGCG CCATTGGAAT GAGCAAATGG CAGGCGATCT GGAGCGTCGT TCTGCCGCAG
GCGCTGCGCC TGGCGCTGCC CGCCTGGTCG AACGAAGCCA TCGCCATGCT GAAGTATACC
TCGGTCGTCT TTCTGATCGC CGTTCCCGAC CTTATGGGGC AGGCCAAGAT TCTGGCGAGC
CGGTATTTCG CTCCGATCCA GATATATCTG ATCGTCGCCG TGTTCTACAT CGCACTGGTC
GGCATCGCCT ACCTGATCCT CACCATGATC GAACGCCGTG TGCGCATTCC CGGTCTGACG
GGCGACGTCG GGTGA
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| Protein sequence | MHDFIDLLSR VTPDLLQGTV VTLQIAAISL ILGMIVGLPV GIGRVYGPVW LQRLLGAYIT
LFQGTPLLIQ LFTVYYGLPD VGITLGRLQA AFLTLGLNSA AYQAEYLRSA LQSVSEGQMV
AARAIGMSKW QAIWSVVLPQ ALRLALPAWS NEAIAMLKYT SVVFLIAVPD LMGQAKILAS
RYFAPIQIYL IVAVFYIALV GIAYLILTMI ERRVRIPGLT GDVG
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