| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2172 |
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| Symbol | |
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| ID | 5539653 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 2791744 |
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| End bp | 2793441 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640894306 |
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| Product | cyclic nucleotide-binding protein |
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| Protein accession | YP_001432274 |
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| Protein GI | 156742145 |
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| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0437] Fe-S-cluster-containing hydrogenase components 1
[COG3301] Formate-dependent nitrite reductase, membrane component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.653365 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000000233561 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCAAACT ATGGTTTCCT GATCGACCAC CGGAAGTGTA TTGGCTGCCA CGCATGCAGC
ACCGCCTGCA AGTCGGAAAA TGAAGTTCCG CTTGGCGTCT ACCGGACATG GGTCAAGTAT
GTTGAGACAG GAACCTTTCC TGACACCCGA CGCCACTTTC AGGTGACCCG GTGCAACCAC
TGCGCAAACC CGCCGTGTGT GCGCATCTGT CCGGTGACTG CGATGTATCA GCGCGCCGAT
GGCATTGTCG AGTTCGATCC GAAGGCGTGC ATTGGCTGCA AAGCCTGCTT GCAGGCATGC
CCGTATGATG CGATCTACAT CGACCCAGAA ACACGCAGCG CCGCCAAATG TCACTTTTGT
TCGCACCGCA TCGAACTCGG TTTGAAACCG GCGTGTGAAG TGGTCTGCCC TGAGCAGGCG
ATCATCTCTG GCGATCTCGA TGACCCCAAC AGCCTGATTC GCCGCCTGAT CGCTCGCGAG
CCGGTGACGG TGCGCAAACC GGAGCAAGGC ACGGCGCCGA AGTTGTTTTA CATCGATGCA
AATGAAGCGA CGCTGACTCC TACTGCAACG CAGCAACACG CGACGTTCTT TTGGGCGGAT
GTTGCGAGTG ATCAGGCGCG CGCACTCAGG GTGCAGCACG ACATTATCCC GCTGGAAGCC
GTTCATGCTG GCTCGTCTAA TGGTCGCATG CTGCATACTG CCGCCAACGG TGCGCTGCTC
CGCACACCCG GCGTTCAGGG ATTGGGCGTT GGCAACAGTG CGTATGCCCC GGCGCGCATC
GCCGGTCAGA TGGTGCAGAC AGCATACAAT GCGCAGCATA CCATCCCCTG GCACTGGCCC
GTACCGGCAT ACCTGGTGAC GAAGGGGATC GGCAGCGGCA TCTTCCTGGC GACAGCGCTG
GCCATCGGAT TGGGGCTGGC GCACATGACG CCGTTCTTCG CAGCAGTTGC GCTCTTTCTG
ACTCTCCTGT TCACCGGTAT CACGACCGCA CTCCTGATCT ACGATCTCGA AAAACCACTC
AAGTTCCTGA CCATTCTCAC GCGCCCGCAG TGGCGCAGTT GGCTGACGCG CGGCGCATTT
CTTCTGATCG GTTTCACCAT GATTGCCGGG TTGTGGTTTC TGATGGAAGC AGGGATGGCG
CTCGGTCTGT TGCCTGACAC GACAGGTCTG GCGCTGCGAC CATTGTTTGC ATGGGTCGGG
CTGCCATTGG GTGTTCTGGC AGCCATCTAT ACGGCTTTCC TCTTTGCGCA GGCGGAAGGG
CGCGATCTCT GGCAAAGCCC GTTGCTCCCC GTTCATCTCC TGGTGCAGGC GTTGATGGTC
GGATCGGGAA TGCTGCTGGC AACCGGGCTG GCGATCCCGC TTCCTGCGGG GATGGATGTG
TTCATCGTCC GGCTTTTCGG TGTCAGCCTG GTTATCGATC TCTTCGTCAC CCTGCTCGGC
GAGTTTGGCA TTCCTCATGC CAGTGAAGTT GCTGCGCGCG CTGCCCAGGC TATCAGCCAT
GGTCGCTATC AGCGCCATTT CTGGCAGGGT GGCATTCTGC TGGGTCATCT CCTGCCACTG
GCGCTGATCG CGCTGGCAGT TGCAGCGCCC GCAATCGCTG GAGTTGCACT GGCAGCCGCA
GGGTTGGCAG CAATTGCCGG ATTGTTCATG TTCGAGTACG CTTTTGTGAT GGCGCCGCAG
GAAATTCCGA ATAGTTGA
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| Protein sequence | MPNYGFLIDH RKCIGCHACS TACKSENEVP LGVYRTWVKY VETGTFPDTR RHFQVTRCNH
CANPPCVRIC PVTAMYQRAD GIVEFDPKAC IGCKACLQAC PYDAIYIDPE TRSAAKCHFC
SHRIELGLKP ACEVVCPEQA IISGDLDDPN SLIRRLIARE PVTVRKPEQG TAPKLFYIDA
NEATLTPTAT QQHATFFWAD VASDQARALR VQHDIIPLEA VHAGSSNGRM LHTAANGALL
RTPGVQGLGV GNSAYAPARI AGQMVQTAYN AQHTIPWHWP VPAYLVTKGI GSGIFLATAL
AIGLGLAHMT PFFAAVALFL TLLFTGITTA LLIYDLEKPL KFLTILTRPQ WRSWLTRGAF
LLIGFTMIAG LWFLMEAGMA LGLLPDTTGL ALRPLFAWVG LPLGVLAAIY TAFLFAQAEG
RDLWQSPLLP VHLLVQALMV GSGMLLATGL AIPLPAGMDV FIVRLFGVSL VIDLFVTLLG
EFGIPHASEV AARAAQAISH GRYQRHFWQG GILLGHLLPL ALIALAVAAP AIAGVALAAA
GLAAIAGLFM FEYAFVMAPQ EIPNS
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