Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2159 |
Symbol | |
ID | 5539639 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 2774087 |
End bp | 2775445 |
Gene Length | 1359 bp |
Protein Length | 452 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640894292 |
Product | tryptophan synthase subunit beta |
Protein accession | YP_001432261 |
Protein GI | 156742132 |
COG category | [R] General function prediction only |
COG ID | [COG1350] Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) |
TIGRFAM ID | [TIGR01415] pyridoxal-phosphate dependent TrpB-like enzyme |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.000410823 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAGACCG TCAAGTATCT GCTCGCTGAG GATCAGATGC CGACCGCCTG GTATAATATT CAGGCAGATC TGCCCACACC GCCGCCACCG GTGCTCCATC CCGGCACAGG ACAGCCGATT GGTCCGCAGG ACCTGGCGCC GCTCTTTCCG ATGGCGCTGA TCATGCAGGA GGTGAGCACC GAGCGCTTCA TCGAAATTCC CGAAGAGGTG CAGACAATCT ATCGCCAGTG GCGCCCGACG CCGCTGTTCC GCGCGCGACG CCTCGAACAA GCGCTCGACA CGCCAGCCCG CATTTACTAC AAGTATGAGG GCGTCAGTCC CGCAGGAAGC CATAAGCCGA ATACCGCCGT CGCGCAGGCG TACTACAACC AACAGGAAGG GGTCAAACGC CTGGTGACCG AAACCGGCGC GGGGCAATGG GGTTCGTCGC TGGCAATGGC GGGCGCGTTC TTCGGGATTG AGGTGCTGGT CTTTATGGTC AAGGTCAGTT ACCAGCAGAA GCCGTACCGC CGCGCGCTGA TGGAAGCCTA CGGCGCGCGC GTGGTCGCCA GCCCCAGCGA AGAGACCAAC GCCGGGCGAG CGATCCTTGC CGAACATCCC GATAGCACCG GCAGCCTGGG AATCGCTATC TCCGAAGCGG TCGAGGTGGC AGCACAGGAC CCGGAGGCGA AGTATTCGCT CGGCAGCGTG CTCAACCACG TGCTGCTGCA CCAGACTGTT ATCGGCGAAG AGGCGCTGGC GCAGATGGAG ATGGCGGGTG ATTATCCCGA TATTATCGTT GGCTGCACTG GCGGCGGCAG CAACTTCAGC GGCATCTCGT TCCCGTTCAT CGGAAAGAAA CTGCGCGGCG AGCGCAATGT GCGTGTGGTG GCGGTCGAAC CGGCAGCCTG CCCGAGTATG ACGCGCGGTA AGTATGCCTA CGACTTTGGC GACACCGCCA AACTGACGCC GCTCGTCAAG ATGCACACTC TGGGACATGA TTTTGTGCCG CCGGGGATTC ATGCCGGTGG GCTGCGCTAC CACGGTATGG CGCCGCTGGT CAGTCATCTG CTCGAATTGG GAGTGATCGA GGCGATCAAC GTTCAACAAC TTGAGACGTT CGCGGCAGGC ATTCAGTTCG CTCGTGCAGA GGGGATCATC CCGGCGCCGG AAGCCAACCA CGCCGTTGCG GGTGCGATCC GTGAGGCGCT GCGCTGCAAG GAGGAAGGGG TCAGCCGCGC GATCTTGTTT AACCTCTGCG GACACGGGCA CTTCGATATG CAGGCGTATA CCGACTACAT GGCAGGTAAA CTGCGCGACT ACGAGTACTC TGAGAAAGAG GTCGCCATGG CGCTCGCCGG GTTGCCGTCG GTGGAGTAG
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Protein sequence | MKTVKYLLAE DQMPTAWYNI QADLPTPPPP VLHPGTGQPI GPQDLAPLFP MALIMQEVST ERFIEIPEEV QTIYRQWRPT PLFRARRLEQ ALDTPARIYY KYEGVSPAGS HKPNTAVAQA YYNQQEGVKR LVTETGAGQW GSSLAMAGAF FGIEVLVFMV KVSYQQKPYR RALMEAYGAR VVASPSEETN AGRAILAEHP DSTGSLGIAI SEAVEVAAQD PEAKYSLGSV LNHVLLHQTV IGEEALAQME MAGDYPDIIV GCTGGGSNFS GISFPFIGKK LRGERNVRVV AVEPAACPSM TRGKYAYDFG DTAKLTPLVK MHTLGHDFVP PGIHAGGLRY HGMAPLVSHL LELGVIEAIN VQQLETFAAG IQFARAEGII PAPEANHAVA GAIREALRCK EEGVSRAILF NLCGHGHFDM QAYTDYMAGK LRDYEYSEKE VAMALAGLPS VE
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