| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2151 |
|---|
| Symbol | |
|---|
| ID | 5539631 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 2761604 |
|---|
| End bp | 2762695 |
|---|
| Gene Length | 1092 bp |
|---|
| Protein Length | 363 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640894284 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001432253 |
|---|
| Protein GI | 156742124 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00896041 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00536287 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATCACAA CCCTCCCTGA ACAAATCGCC GCTCTGCCGC CGACCAATCG TGCGCGGTGC
GAACGTCTCT TCTTTGTACA GCGCGTCGAG GGTCAGGCGG TCATTCCCCG CGAAATGGAA
GCATGGGTTG CCAGCAGTTT CGGCGATATT GCTGGAGTTC GTCGACAAAC GATTATCCGC
GTCGTCAATC GCTTCACCCT CGAAGGAACC CTGTTCAATC CGCTGCGCGC GCTGCGACCC
GCAGGAAAGA CAACCAGCGA CGCCGACCTG CACGCCTGGA TCGAATCGGA ACTGCGTGAT
CGCGACTTCT TCGCCCAGCC GCTCCAGGCG ACCAGCGCCG ACACCTTCGG GCGCATCCGC
GGTCGCTTTT GCGTGACTGC ATCGAACATT GCCAAATACG ACGGATGGCA TGGTCTGGTG
GTGTTCGATG AACCGCACCC ACTCCACTTC AACCGCGACC AGTTTGCCGA TTACCTGGAT
GTGGCGCTGC GCTGGCTCGA CGCAGCGCAC CGGTGCGACC CACAGGCGAT TTACCCGATG
ATTACCTGGA ACTGCCTGCC CCGCAGCGGC GCCACTATCG CCCATGGGCA CATGCAGATG
TCGCTGGCGC GTGCCATGCA CTATACCAGA CCTGAACTCT GGCGTCGCGC CGCACTCCAG
TACGGTGACA TTCCGCGCTA CGTCTCCGAT CTCATTGCGG TGCATGCCGA TCTGAATCTG
CTGATTGCCG ATACGCCTGC GGGTCATGTA TTTGCCCATT TGACGCCGCT GCGCAACCGC
GAGATTGTCG CTCTGCTGTC ACATCGGGCG GATGCAGCAC TGCTCGCCGA CCGCTTGACC
GACCTGATCT ATCCCGTCCT GCGTGCTCTG ATCGATCATC ACCACGTGCG CGCCTTCAAT
GTTGGCATTG CGCTGCCGCC ATTCACCGAC AAAACCGGCG CCTGGAGCGG CATGCCGGTG
ATCGCGCGTG TCGCCGACCG CGGACCGGCG TTGAGTATCC ACAACGACTG GGGTGCAATG
GAACTGTTCG CCACCGGGTG CGTCACGGTT GATCCGTTCG AGGTGGCGAC GGCGCTGAAG
CGAGCAGGGT GA
|
|---|
| Protein sequence | MITTLPEQIA ALPPTNRARC ERLFFVQRVE GQAVIPREME AWVASSFGDI AGVRRQTIIR
VVNRFTLEGT LFNPLRALRP AGKTTSDADL HAWIESELRD RDFFAQPLQA TSADTFGRIR
GRFCVTASNI AKYDGWHGLV VFDEPHPLHF NRDQFADYLD VALRWLDAAH RCDPQAIYPM
ITWNCLPRSG ATIAHGHMQM SLARAMHYTR PELWRRAALQ YGDIPRYVSD LIAVHADLNL
LIADTPAGHV FAHLTPLRNR EIVALLSHRA DAALLADRLT DLIYPVLRAL IDHHHVRAFN
VGIALPPFTD KTGAWSGMPV IARVADRGPA LSIHNDWGAM ELFATGCVTV DPFEVATALK
RAG
|
|---|
| |