Gene Rcas_2136 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2136 
Symbol 
ID5539616 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp2746787 
End bp2747560 
Gene Length774 bp 
Protein Length257 aa 
Translation table11 
GC content62% 
IMG OID640894270 
Product16S ribosomal RNA methyltransferase RsmE 
Protein accessionYP_001432239 
Protein GI156742110 
COG category[S] Function unknown 
COG ID[COG1385] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR00046] RNA methyltransferase, RsmE family 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0581453 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTCGCC GTTCGCGTGA TACTGTTCAG AGCAACACGT ATCGTTTCTT TGTCGATCCT 
GCGGCATTCG ACACGGAACG GGTGCGTCTG TTCGATCCCG AACTGGGACA TCAACTGGCA
AACGTGTTGC GGTTGGGGCG CGGTGAGCGC GTCGTTTTGC TCGATGGCGA GGGGTGGCAG
TACACTGTCA TGTTGGAAAC AGTTGATCGG CGCGGGACGG TGAACGGTGT GATCGAGTCG
CGCGAAGTTG CAGGCGGCGA ACCGCGCCTT GCGCTGACCG TCTACCTGCC GCTCATCCGG
GCGGAGCGGT TCGAGTGGGC GTTGCAGAAA GGGGTCGAAC TGGGGGTAGC AGCGTTTGTT
CCAACCGTAT GTGCGCGCAG CATCGACGCT GCTCCCGACG AGCGCCGTCT TGCGCGCTGG
CGGCGGATTA TCCGCGAGGC AGCCGAACAA TCGCGGCGCG GACGGCTTCC GCGCTTGGCG
CCTTCCCTGA CGTTCAACGA AGCATGCACA CAGTTTACGC TCCATTCCCC TGCACTGCTT
CTATGGGAAG GCGACAACGC CACGCCGCTT GCCGGGGCGC TCCACGCGCT ACGCCGCGAC
ACATCACCGG CGGCGCTGGG CATCTTCAGC GGACCAGAGG GCGGATTGAC CAACGATGAA
CGCCAATGGG CTGAACGACA TGGTATCATG ATCGTGTCGC TTGGTCCGCG CACGCTGCGC
GCTGAAACCG CACCCATTGC GGCTATAGCG ATCATTATGT ATGAGATTGG ATGA
 
Protein sequence
MPRRSRDTVQ SNTYRFFVDP AAFDTERVRL FDPELGHQLA NVLRLGRGER VVLLDGEGWQ 
YTVMLETVDR RGTVNGVIES REVAGGEPRL ALTVYLPLIR AERFEWALQK GVELGVAAFV
PTVCARSIDA APDERRLARW RRIIREAAEQ SRRGRLPRLA PSLTFNEACT QFTLHSPALL
LWEGDNATPL AGALHALRRD TSPAALGIFS GPEGGLTNDE RQWAERHGIM IVSLGPRTLR
AETAPIAAIA IIMYEIG