| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2110 |
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| Symbol | |
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| ID | 5539590 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 2710683 |
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| End bp | 2712890 |
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| Gene Length | 2208 bp |
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| Protein Length | 735 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640894244 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001432213 |
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| Protein GI | 156742084 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.233193 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCTGTGT CCAAGTCACG CATCCTGAGT CGTCGCAGAT TTCTGACACT TTCAGCCATG
ACCGCTGCCA GCGCCGCGAT TGCTGCTTGC GGCGGCGGGC AACCCGCGCA AGCGCCAACT
ACGGCGCCGG CGCCAACGGC AGCGCCAACC ACGGCGCAAG CGCCAACCGT CGCTATTCCG
CCAACTACGC CGCCGCAGGC GACCGCTGTT CCCCAGACGG TCAGCAAGTA TAAGGAGGCG
CCAGAACTGG CAAAGCTGGT TGCCGAAGGC AAATTGCCGC CCGTTGACGA GCGACTGCCG
AAAAACCCGT ATGTCGTACC GCACAAGTGG CTCACCGTCG GCAAGTATGG CGGAACGATC
AACTTTACCA ACTCTTGGGG ACCCGACGGT ATGGCGACGA TTGTGCAGGA GAGTCAGTAT
GGTCACTCAA TCCTGCGCTG GCTCGATGAT GGCCTGAAGA TCGGTCCGGG TCTTGCCGAG
AGTTGGGAAG CGAACGCCGA TGCCAGCGAG TGGACGTTCA AGTTCCGCGA AGGGCTGAAA
TGGTCGGATG GGCATCCCTG GACAGTTGAT GACATTCTCT ACTGGTGGGA GTACATGGTC
GGCGGCAACG GCAAGGAGAA GGAGTTCCCC GAAGGGCTGA AACCGATCGA GCCGCCGCCG
GACGAAGGGC GCTCCGGTAC GGGAACGCTG GCGACGCTGA TCAAAGTCGA TGACTATACG
CTGACGATGA AGTTCGACGC CCCCGCACCG CTGACGGCGG ATCGTCTGGC GATGTGGGTG
AATGCCGGCA TTGGGCCGCG CTGGATGGCG CCGCGTCACC ATATGGAGCA GTTTAACCCC
GTCCTCAATC CCGATAAGTA CAAAGACTGG GATGAGCACA CCAAGCGCAT TCGCTTCGTC
ACCAACCCCG ACTGCCCGAC GATGACCGGT TGGAAGTGTG AGAGTTTCGA GGAGGGTGTG
CGCGGTGTCT ATACGCGCAA TCCGTACTAC TGGTGCGTGG ACGCTGAGGG GAATCAGTTG
CCCTATATCG ACCGCATTAT CTCGACCACC TTCCAGAACA GCGAGGTCGA AAAACTGAAC
GTGATCCAGG GCAAGAGCGA CTTTACCCAT CACTGGGTGC TCAGCCTCGA TGATGTGCCC
AACCTGCGCC AGAATGCCGA TGCTGGCGGG TATGAGGTGC GCTTCTGGGA GAGCGGGTCG
GGTTCGGGCA CGTCGTTCTT CTTCAGTTAC GACTACAACG ATCCAAAGTG GCGCGAACTG
ATCCGCAACC CGAAGTTCCG TCAGGCGTTG TCGCTGGCGT TCAACCGCGC CGAATTGCAG
AAGACGCAAT ACTTCGGCAC CGGTGAGTTG ACGACCGGCA CCTTCAGCCC GAAAGCGATC
GAGTACAATA TCGACGAGAA AGGCAATCCG GATCGGGCCA ATGCACGCTA CCGCGAATGG
CGCGATAGTT ATGTGGCGTT CGATCAGGAG CGGGCGAAGG CGTTGCTCGA CGAAATTGGC
GTCAAAGTTG GCGCTGACGG GTTCCGCACC TTCCCGGACG GCTCGCCGCT CGATATTCAG
GTGATCGTCG CATCGAACAC GAGTAAGAAC ACTATCGCTC AAAACGAGCA GATGATCCGC
GACTGGGGGC AGATCGGCAT CAAGGCGACG CTTACTCCGG TGCCGCCGCA GGGTCGCCGC
GATGACTGGT TCGCGGGTAA GTTGATGTCG AATGCCGATT GGGGTATTGG CGACGGACCG
AACCATCTGG TCTACCCGCA GTGGTTGGTG CCAATCGAAC CGGAACGCTG GGCGCCCCTC
CACGGTCAGG GGTATCAGTT GCGCGGCACT GCCAGTGAAA AAGAGGAACT GGACAAAGAT
CCCTGGCAGC GCGCGCCGGC TCGTATTGTG CCGTCCGACA AGGACTTCGA TCCGGTTATT
GCCAAACTGC ATGAAATCTA CGACAAGACG AAGGTCGAGC CGGAGTTTCT CAAGCGCACC
CAGATGGTCT GGGAAATGAT GAAGATCCAT GTCGAGAACG GACCGTTCGT ACAGGGGTCG
GTCGCCAACT TCGACCGCGT GTTCATCGTG AAGAAGGGGT TGATGAACGT GCCGAAGAAG
GAAGACCTGG CGCTTGGCGG ATTTACCGAT CCCTGGATCC ATCCCACGCC GGCGGTCTAT
GACCCTGAAG CCTGGTATTG GGATGATCCG TCAAAGCATA CAAGTTGA
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| Protein sequence | MPVSKSRILS RRRFLTLSAM TAASAAIAAC GGGQPAQAPT TAPAPTAAPT TAQAPTVAIP
PTTPPQATAV PQTVSKYKEA PELAKLVAEG KLPPVDERLP KNPYVVPHKW LTVGKYGGTI
NFTNSWGPDG MATIVQESQY GHSILRWLDD GLKIGPGLAE SWEANADASE WTFKFREGLK
WSDGHPWTVD DILYWWEYMV GGNGKEKEFP EGLKPIEPPP DEGRSGTGTL ATLIKVDDYT
LTMKFDAPAP LTADRLAMWV NAGIGPRWMA PRHHMEQFNP VLNPDKYKDW DEHTKRIRFV
TNPDCPTMTG WKCESFEEGV RGVYTRNPYY WCVDAEGNQL PYIDRIISTT FQNSEVEKLN
VIQGKSDFTH HWVLSLDDVP NLRQNADAGG YEVRFWESGS GSGTSFFFSY DYNDPKWREL
IRNPKFRQAL SLAFNRAELQ KTQYFGTGEL TTGTFSPKAI EYNIDEKGNP DRANARYREW
RDSYVAFDQE RAKALLDEIG VKVGADGFRT FPDGSPLDIQ VIVASNTSKN TIAQNEQMIR
DWGQIGIKAT LTPVPPQGRR DDWFAGKLMS NADWGIGDGP NHLVYPQWLV PIEPERWAPL
HGQGYQLRGT ASEKEELDKD PWQRAPARIV PSDKDFDPVI AKLHEIYDKT KVEPEFLKRT
QMVWEMMKIH VENGPFVQGS VANFDRVFIV KKGLMNVPKK EDLALGGFTD PWIHPTPAVY
DPEAWYWDDP SKHTS
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