Gene Rcas_2089 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2089 
Symbol 
ID5539569 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp2681937 
End bp2682743 
Gene Length807 bp 
Protein Length268 aa 
Translation table11 
GC content59% 
IMG OID640894224 
ProductNADH dehydrogenase subunit B 
Protein accessionYP_001432193 
Protein GI156742064 
COG category[C] Energy production and conversion 
COG ID[COG0377] NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases 
TIGRFAM ID[TIGR01957] NADH-quinone oxidoreductase, B subunit 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.580688 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGATG ATCGTGATAT CCAGCTCGAA GCGGAAAAGC AGGGCGTCTT TTTGACGACC 
ATGCAGCGAT TTTATAACTG GGGGCGGCGT TCGTCAGTCT GGCCCCTATC GTTTGGGCTT
GCATGCTGTG CCATTGAAAT GATGGCGACC GGTCTGGCGC GCTTCGACCT GGCGCGCTTT
GGGGCTGAGA TGTTTCGGGC GTCGCCGCGT CAGGCAGACC TGATGATCGT CGCGGGGACG
GTCACGAAGA AGATGGCGCC GCAGGTGGTG CGTCTCTACA ATCAGATGCC CGAACCGCGC
TATGTCATTT CGATGGGCGC CTGCGCGACA TCCGGCGGCC CGTTCCGCGA TGGGTACAAT
GTGTTGCGCG GCATTGATCT TCTGATCCCG GTTGATGTCT ATATTCCCGG TTGCCCGCCG
CGCCCCGAAG CTCTGCTCCA CGCCTTGATG ACATTGCAGA AGCAGATCGA TGCGCAACGC
CTGAACCGGG TGCGCTGGTA TGGCAAACGC GAGGCGAAAG AGTATCCGGT GCCGGCATTT
GGTAAACATG GGTTGGAGAT CGATGGCAAA CTGGTCGATC CGGTTGGCGG GTTGCCGCTT
ATCAGCCCAT ATACGTCGCC AACTCACGGC GAAATGCGCT CCGGCGAGAT CGAACACCCG
GAACTGGTGC GCCATTTCCC GATTATGGAC GAAACGGTCG AACTGGAATC GCCCAACAAG
GCGAAAGGTG TTGCGCCGGA GATTCGGCAT AACGACCTGA AACGCCCTGC TGTCGAGGTG
GATCATGCCC GTGATGAGCA GCGCTGA
 
Protein sequence
MSDDRDIQLE AEKQGVFLTT MQRFYNWGRR SSVWPLSFGL ACCAIEMMAT GLARFDLARF 
GAEMFRASPR QADLMIVAGT VTKKMAPQVV RLYNQMPEPR YVISMGACAT SGGPFRDGYN
VLRGIDLLIP VDVYIPGCPP RPEALLHALM TLQKQIDAQR LNRVRWYGKR EAKEYPVPAF
GKHGLEIDGK LVDPVGGLPL ISPYTSPTHG EMRSGEIEHP ELVRHFPIMD ETVELESPNK
AKGVAPEIRH NDLKRPAVEV DHARDEQR