Gene Rcas_2088 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2088 
Symbol 
ID5539568 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp2681114 
End bp2681470 
Gene Length357 bp 
Protein Length118 aa 
Translation table11 
GC content54% 
IMG OID640894223 
ProductNADH-ubiquinone/plastoquinone oxidoreductase chain 3 
Protein accessionYP_001432192 
Protein GI156742063 
COG category[C] Energy production and conversion 
COG ID[COG0838] NADH:ubiquinone oxidoreductase subunit 3 (chain A) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.81296 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGGCGG ATTATGCGTT TATTGGCGTG TTCTTCATCG GTGCGGTCAT CTTTCCGCTC 
GTGCCGCTGG TGGCCGCGTA TTTCCTTGGA CCCAAACGCC CTACGCCGAT CAAGCTCGAC
ACGTATGAGT GTGGGCTGGA AGCGGTGGGC GACATTCGGG TGCAGTTCAA GATTCAGTAC
TATCTGTATG CACTGGCGTT CGTTATCTTC GATATCGAAG TGGTCTTTCT GTACCCATGG
GCAGTCGCAT ATGGGCAGAT TGGGCTGTTC GCGTTGATTG CAATGGCGAT CTTTCTCGTC
ATTCTGGTCG GTGGTCTGGT GTACGAATGG AAGAAGGGTG CGCTCGAGTG GGTGTAG
 
Protein sequence
MLADYAFIGV FFIGAVIFPL VPLVAAYFLG PKRPTPIKLD TYECGLEAVG DIRVQFKIQY 
YLYALAFVIF DIEVVFLYPW AVAYGQIGLF ALIAMAIFLV ILVGGLVYEW KKGALEWV