| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2068 |
|---|
| Symbol | |
|---|
| ID | 5539548 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 2654324 |
|---|
| End bp | 2654902 |
|---|
| Gene Length | 579 bp |
|---|
| Protein Length | 192 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640894203 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_001432172 |
|---|
| Protein GI | 156742043 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.903797 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGGCTC TCTCTGACGA AGACGCCCTC ATCCAACGCT CCATCGAGGG GGATCACGCC
GCCTTTGCGC AACTCGTGGA ACGCTATGCG GGAGCGGTGT TCAATCTGGC GTATCGCATG
CTGGGGAATG CGCAGGAAGC GGAGGATGCC AGTCAGGAGA TATTCTTGAA GGTCTATGCG
AACCTGGCCC GTTTCGACCG GGAGCGCAAG TTTTCAACGT GGCTGTTGTC AATTGGTTCA
AATTATTGTA TTGATCGGCT GCGGCGGCGG CGCTTCGCCT GGTTGACCCT GGACGACACG
GTGCTGACGA TTCCCAATCC CGGGAAAGGA CCAGAACACA GCGCCATCGA ACGCGAGGAA
CGCGATGCGG TTCAGCGCGC GCTCCTACGC CTGCCGCCCG CCTATCGCGA AGTCGCTGTG
CTGCGTTACT GGCACGATCT TTCGTATGAG GAGATCGTTC AGGCGCTAGG GTTGCCGGAG
AGCACTATCA AAACACGCTT GCACCGCGCA CGTCGTATGC TTGCCGATGC ACTACGCTCT
GAGGGCGTGG TTCAGGAAGA AATGCCATTG CAAGAGTGA
|
|---|
| Protein sequence | MVALSDEDAL IQRSIEGDHA AFAQLVERYA GAVFNLAYRM LGNAQEAEDA SQEIFLKVYA
NLARFDRERK FSTWLLSIGS NYCIDRLRRR RFAWLTLDDT VLTIPNPGKG PEHSAIEREE
RDAVQRALLR LPPAYREVAV LRYWHDLSYE EIVQALGLPE STIKTRLHRA RRMLADALRS
EGVVQEEMPL QE
|
|---|
| |