| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2042 |
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| Symbol | |
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| ID | 5539520 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 2616865 |
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| End bp | 2618889 |
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| Gene Length | 2025 bp |
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| Protein Length | 674 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640894177 |
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| Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
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| Protein accession | YP_001432148 |
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| Protein GI | 156742019 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0986117 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCCAA CCTGCGGTCC GGTCGATGGC GACCTTCTCT CGGCAATCTG GCAACGGTTC
GTTGATACAG GCGTGCTCGA TCCTGCACTC GATCCGATCA TCGCCATGTC CTGGCAACGA
TGCATCCTGC GTTGCAACCC GTATACTGTC GCCGATCTTC CCGGCATCTC CGAAGCGGAG
CTGGCAGATC GTCGCGCCAA ACTGGCGGAT CTCATCGCGC TGGCGCGCCC TATCATGGAA
GACATCTATC AGTTTGTCGA AGGTTCCGGC ATGATCATCG TCCTGCTCGA TGCGTCAGCC
TGCGTTCTGG ACGTGCTTGG CGACGCCAAT GTCCAGCGCC AGGCGGCGTC GCTGGGATTA
CGCCCCGGCG CGTACTGGAA TGAAGGATGC GCCGGAACAA ATGCCTTTGG GCTGGCGCTG
TATGAACGAT GTCCTGTCCA CGTGATCGGC GCAGAACACT TCTTTCAACG CTTCCATGGG
TTGAGCGTCT CAGCGGCGCC TATTTACCAT TGGGAAGGAC GCCCCATCGG CGTTTTGGGG
ATGGCGTGTC TAACCTCCGC CGGCAATGGT GCGACGCTAG CGACGGTTCA CGCCGCAGCG
CGGGCAATCG AACATCAACT CCACGCGGAA AAACTCTTCA ATGAGTTGAA CACCCAGCGC
ACCCTGTTGA GCGCCATTGT AGAGGCGATA TCGGATGGGT TTATCGTCTG TGATCAGGCG
GGTCTGGTCG TGCATATAAA CCTGTGCGCA GCGCAGATTC TGGGGGTCAA GCGCGAGGCG
GCTGTCGGTC GTGCATTGGG CGCCTCGGTG GAGTTGCCGC CGGTGGTTGC GGAGGCGATG
CGTCAATGTG TAATGCTGAC CGACGCTGAG GTTAGTTTTC AGGTTCAGAA GGTGCAGATC
AGGTGCCTGA TCAGTCTTAT CCCGATCCAA TGGCAACTCG ACCGGGTGAA CAATGTCGAA
GGGTTCATTC TGACCTTGCG ACGCCTGGAA CAGGTGCATC GGATGGTGCA GCGCATGGTT
GGAGCGCGCT CGAATTTTAC CTTCGCCAGC ATTATCGGCT CATCGCATGC GATCAATCAG
GCGCGCCGGC AGGCGCAGGC GGCTGCCCGC AGCAGCGTGC CGGTGCTGAT CGTTGGGGAA
AGTGGCACCG GCAAAGGAGT GCTGGCGCGC GTGATCCATA ATGAAAGTGC GCGGGCGGAA
GGTCCCTTCG TAACGGTCAA TTGCCGGGTT TTGCCGCGCG ACCTGATTGT GGGCGAGTTT
CTGGGATATG AAATCGGCGC ATTTCACAGC AATAGGCTGC AAGGGCAACC GGGCAAGTTT
GAACTGGCGC ACGGCGGCAC GCTCCACCTG GAAGAGATCG AAGCGCTGCC GCTCGATATG
CAGACGGCGC TGCTGCGCGT CGTTGAGACC GGCGAGGTGG TGCGTCTGGG AGGTCATCGC
GTGATCTGCG TCAATGTGCG CTTGATTGTG ACCACTTCTC TCAATTTGGA ACGATTGGTG
CTGCGTGGAG ATTTTCGCGC CGATCTCTAC TATGCTGTCA GCCGCATGAC GATCCGGCTG
GCGCCGTTGC GTGAACGCAC AGCGGATCTC CCGCTCCTCG TTCGTGATAT TCTGGAACGG
ATGCACCGCC AAACCGGCAG AGCCGTCAGT ATCTCGTATG ATGCCCAGCA ATTGATGCGC
TGCTATTCCT GGCCCGGCAA TGTGCGCGAA TTGGAAAACG TGCTCGAACG CGCGGCGAGC
CTGGCGGATA ACGGCATGAT CGATGTCTGG CATCTCCCGG ACGCGATCCG CGGTCGTCCG
TCAGAAACCG AGCCAGGGTA TGATCAACAC GTGCCGGCGC TGCACGAGGC GGAATATGAA
GCCATTGTGC GCGCCGCTCG CGCCTGTCAG GGAAATGCCA CCCGCATGGC GCAGATGCTG
GGCATTGGTC GGACCACCCT GTGGCGGAAA CTGAAAGCCG CCAATGTCTC CCTCGATGAT
TTTAAGCCGT CTCTCCTTGC GAAACGTTCC TCTCGTCGCT CATAA
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| Protein sequence | MQPTCGPVDG DLLSAIWQRF VDTGVLDPAL DPIIAMSWQR CILRCNPYTV ADLPGISEAE
LADRRAKLAD LIALARPIME DIYQFVEGSG MIIVLLDASA CVLDVLGDAN VQRQAASLGL
RPGAYWNEGC AGTNAFGLAL YERCPVHVIG AEHFFQRFHG LSVSAAPIYH WEGRPIGVLG
MACLTSAGNG ATLATVHAAA RAIEHQLHAE KLFNELNTQR TLLSAIVEAI SDGFIVCDQA
GLVVHINLCA AQILGVKREA AVGRALGASV ELPPVVAEAM RQCVMLTDAE VSFQVQKVQI
RCLISLIPIQ WQLDRVNNVE GFILTLRRLE QVHRMVQRMV GARSNFTFAS IIGSSHAINQ
ARRQAQAAAR SSVPVLIVGE SGTGKGVLAR VIHNESARAE GPFVTVNCRV LPRDLIVGEF
LGYEIGAFHS NRLQGQPGKF ELAHGGTLHL EEIEALPLDM QTALLRVVET GEVVRLGGHR
VICVNVRLIV TTSLNLERLV LRGDFRADLY YAVSRMTIRL APLRERTADL PLLVRDILER
MHRQTGRAVS ISYDAQQLMR CYSWPGNVRE LENVLERAAS LADNGMIDVW HLPDAIRGRP
SETEPGYDQH VPALHEAEYE AIVRAARACQ GNATRMAQML GIGRTTLWRK LKAANVSLDD
FKPSLLAKRS SRRS
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