Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2038 |
Symbol | |
ID | 5539516 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 2611821 |
End bp | 2612438 |
Gene Length | 618 bp |
Protein Length | 205 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640894173 |
Product | ECF subfamily RNA polymerase sigma-24 factor |
Protein accession | YP_001432144 |
Protein GI | 156742015 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.304694 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTCAGG TCAGGATGCC AGCCGCTGAT TCGTCTGCAC TGGACGATGA GGTGTTGATT ACCCGTGTGG CGCGTCGCGA TAGCAGCGCA CTTGAGCATC TGTATGATCG ATATGCGCGT GTCGTGTACG CCACGGCTCT TCGCATGCTC AGAAATACCG AGATGGCGGA GGATATCGTC CAGGAAACGT TCTGGCGCGT CTGGCGACGC AGCGCGTCAT TTGCCGTCGG TCGCGGGCAG GTCGCCGGAT GGATTTTTGG CATCGCCCAC AATCTGTGCA TCGACGAACT CCGTCGGCAG CGCTCACGCC CGATCACGGT GCAGAGTGAG CGCGAAGAGC AGGCAATGTT CGAGCAGCCA GACGAGCAAA ACGATGTTGT GGGTGAGGCT ATCGCGCGAG AGCGCCGACG AATGATTCTT TGGGCACTGG CGCAGATCCC GCCAGAGCAG CGCGAGGTGC TGGAACTGGC TTATTTTGGC GGGCTTTCAC AGAGTGAGAT TGCCCAGCGG TTGAATAGCC CGATCGGAAC GGTTAAAACA CGCACCAGGC TTGCATTGCA GAAGATGCGC GACTTGTTGC ACAATCAAAA CATCGGGGTG GAAGACCTGC ACGAATGA
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Protein sequence | MSQVRMPAAD SSALDDEVLI TRVARRDSSA LEHLYDRYAR VVYATALRML RNTEMAEDIV QETFWRVWRR SASFAVGRGQ VAGWIFGIAH NLCIDELRRQ RSRPITVQSE REEQAMFEQP DEQNDVVGEA IARERRRMIL WALAQIPPEQ REVLELAYFG GLSQSEIAQR LNSPIGTVKT RTRLALQKMR DLLHNQNIGV EDLHE
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